Evidence map›Paper›PMID 21652655›Full record

ArticleDevelopment (Cambridge, England)2011

The GUDMAP database--an online resource for genitourinary research.

Simon D Harding, Chris Armit, Jane Armstrong, Jane Brennan, Ying Cheng, Bernard Haggarty, Derek Houghton, Sue Lloyd-MacGilp, Xingjun Pi, Yogmatee Roochun and 14 more

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 161 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
161citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

161 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  20. Biomedicines · 2022
    Article

101 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Simon D HardingMRC Human Genetics Unit, Western General Hospital, Edinburgh EH4 2XU, UK. sharding@hgu.mrc.ac.uk
Chris Armit
Jane Armstrong
Jane Brennan
Ying Cheng
Bernard Haggarty
Derek Houghton
Sue Lloyd-MacGilp
Xingjun Pi
Yogmatee Roochun
Mehran Sharghi
Christopher Tindal
Andrew P McMahon
Brian Gottesman
Melissa H Little
Kylie Georgas
Bruce J Aronow
S Steven Potter
Eric W Brunskill
E Michelle Southard-Smith
Cathy Mendelsohn
Richard A Baldock
Jamie A Davies
Duncan Davidson

Funding

Kidney molecular atlas projectU01DK070181 · NIDDK · HARVARD UNIVERSITY · PI MCMAHON, ANDREW P. · 2004 to 2010
$5.9M
Molecular Events in Urinary Tract FormationR01DK061459 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2003 to 2012
$4.4M
3D atlas &database of murine urogenital developmentU01DK070200 · NIDDK · MEDICAL RESEARCH COUNCIL · PI BALDOCK, RICHARD · 2004 to 2010
$3.5M
GUDMAP- Database and WebsiteU01DK092983 · NIDDK · UNIVERSITY OF EDINBURGH · PI BALDOCK, RICHARD ALAN · 2011 to 2016
$3.2M
Murine Atlas of Genitourinary DevelopmentU01DK070136 · NIDDK · UNIVERSITY OF QUEENSLAND · PI LITTLE, MELISSA HELEN · 2004 to 2009
$2.2M
Generating molecular markers that selectively label urothelial sub-populationsU01DK094530 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2011 to 2015
$1.6M
Vitamin A dependent events in urinary tract formation.R56DK082963 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MENDELSOHN, CATHY LEE · 2009 to 2009
$150k
Medical Research Council MC_U127527203NIDDK NIH HHS DK070136NIDDK NIH HHS DK070181NIDDK NIH HHS DK070200NIDDK NIH HHS R01 DK061459NIDDK NIH HHS R56 DK082963NIDDK NIH HHS U01 DK070136NIDDK NIH HHS U01 DK070181NIDDK NIH HHS U01 DK070200NIDDK NIH HHS U01 DK092983NIDDK NIH HHS U01 DK094530
6 · The paper itself

Abstract

The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is an international consortium working to generate gene expression data and transgenic mice. GUDMAP includes data from large-scale in situ hybridisation screens (wholemount and section) and microarray gene expression data of microdissected, laser-captured and FACS-sorted components of the developing mouse genitourinary (GU) system. These expression data are annotated using a high-resolution anatomy ontology specific to the developing murine GU system. GUDMAP data are freely accessible at www.gudmap.org via easy-to-use interfaces. This curated, high-resolution dataset serves as a powerful resource for biologists, clinicians and bioinformaticians interested in the developing urogenital system. This paper gives examples of how the data have been used to address problems in developmental biology and provides a primer for those wishing to use the database in their own research.

Indexed as

Databases, GeneticInternetAnimalsHumansMiceSoftwareUrogenital System

Identifiers

PMID21652655
PMCPMC3188593

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.