Evidence map›Paper›PMID 21647380›Full record

ArticlePloS one2011

Solution structure of LC4 transmembrane segment of CCR5.

Kazuhide Miyamoto, Kayo Togiya

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Artificial RING finger reveals unique auto-ubiquitination with E2 specificity.Protein science : a publication of the Protein Society · 2023
    Article
  3. Solution structure of the zinc finger domain of human RNF144A ubiquitin ligase.Protein science : a publication of the Protein Society · 2020
    Article
  4. Zinc finger domain of the human DTX protein adopts a unique RING fold.Protein science : a publication of the Protein Society · 2019
    Article
  5. Unique RING finger structure from the human HRD1 protein.Protein science : a publication of the Protein Society · 2019
    Article
  6. Unique auto-ubiquitination activities of artificial RING fingers in cancer cells.Protein science : a publication of the Protein Society · 2018
    Article
  7. Solution structure of the PHD finger from the human KIAA1045 protein.Protein science : a publication of the Protein Society · 2018
    Article
  8. Article
  9. The unique N-terminal zinc finger of synaptotagmin-like protein 4 reveals FYVE structure.Protein science : a publication of the Protein Society · 2017
    Article
  10. The zinc finger domain of RING finger protein 141 reveals a unique RING fold.Protein science : a publication of the Protein Society · 2017
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kazuhide MiyamotoDepartment of Pharmaceutical Health Care, Faculty of Pharmaceutical Sciences, Himeji Dokkyo University, Himeji, Hyogo, Japan. miyamoto@himeji-du.ac.jp
Kayo Togiya
Himeji Dokkyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CC-chemokine receptor 5 (CCR5) is a specific co-receptor allowing the entry of human immunodeficiency virus type 1 (HIV-1). The LC4 region in CCR5 is required for HIV-1 entry into the cells. In this study, the solution structure of LC4 in SDS micelles was elucidated by using standard 1H two-dimensional NMR spectroscopy, circular dichroism, and fluorescence quenching. The LC4 structure adopts two helical structures, whereas the C-terminal part remains unstructured. The positions in which LC4 binds to the HIV-1 inhibitory peptide LC5 were determined by docking calculations in addition to NMR data. The poses showed the importance of the hydrophobic interface of the assembled structures. The solution structure of LC4 elucidated in the present work provides a structural basis for further studies on the HIV-1 inhibitory function of the LC4 region.

Indexed as

Amino Acid SequenceBinding SitesBiomimetic MaterialsCell MembraneMicellesModels, MolecularMolecular Sequence DataPeptide FragmentsProtein Structure, SecondaryReceptors, CCR5Sodium Dodecyl SulfateSolutionsMicellesPeptide FragmentsReceptors, CCR5Sodium Dodecyl SulfateSolutions

Identifiers

PMID21647380
PMCPMC3103582
OpenAlexW1970833810

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.