Evidence map›Paper›PMID 21647302›Full record

ArticleInternational journal of biological sciences2011

The DNA binding and bending activities of truncated tail-less HMGB1 protein are differentially affected by Lys-2 and Lys-81 residues and their acetylation.

Ivan Elenkov, Petar Pelovsky, Iva Ugrinova, Masayuki Takahashi, Evdokia Pasheva

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. High-Mobility Group Box-1 and Liver Disease.Hepatology communications · 2018
    Review
  8. Review
  9. Unconventional Pathways of Secretion Contribute to Inflammation.International journal of molecular sciences · 2017
    Review
  10. Article
  11. Article
  12. HMGB1 in health and disease.Molecular aspects of medicine · 2014
    Review
  13. Article
  14. Article
  15. Combinatorial control of gene expression.BioMed research international · 2013
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ivan ElenkovInstitute of Moleculat Biology, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria.
Petar Pelovsky
Iva Ugrinova
Masayuki Takahashi
Evdokia Pasheva
Bulgarian Academy of Sciences · BGLaboratoire de Thermique et Energie de Nantes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of lysines 2 and 81 as target sites for acetylation in full-length HMGB1 and truncated tail-less protein, respectively, has been studied by mutation analysis for the abilities of these proteins to bind and bend DNA. The DNA bending ability of truncated tail-less HMGB1 containing Lys-2 mutated to alanine does not differ from that of the wild-type protein, while the same mutation of Lys-81 reduced the bending capacity of the mutant protein. These data demonstrate that Lys-81 is critical for the DNA bending ability of truncated HMGB1. Such a conclusion is further confirmed by the experiments carried out with CBP-acetylated proteins: acetylation of Lys-2 in mutant protein K81/A81 alleviated DNA bending and induced DNA end-joining. On the contrary, the acetylation of Lys-81 in the mutant K2/A2 enhanced the bending potential of HMGB1∆C. Regarding the ability of HMGB1 to specifically bind bent DNA, the individual mutations of either K2 or K81 as well as the double mutation of both residues to alanine were found to completely abolish binding of truncated tail-less HMGB1 to cisplatin-modified DNA. We conclude that unlike the case with the bending ability of truncated HMGB1, where Lys-81 has a primary function, Lys-2 and Lys-81 are both critical for the protein's binding to cisplatin-modified DNA. The mutation K2/A2 in full-length HMGB1 and acidic tail removal induce the same conformational changes. Any further substitutions at the acetylable lysines in the truncated form of HMGB1 do not have an additional effect.

Indexed as

AcetylationAcetyltransferasesAnimalsAntineoplastic AgentsCircular DichroismCisplatinDNAHMGB1 ProteinHot TemperatureLysineMutationRatsAcetyltransferasesAntineoplastic AgentsCisplatinDNAHMGB1 ProteinLysineacetylationbinding to platinated DNADNA bending.HMGB1 proteinLys-2 and Lys-81 residuestail-less HMGB1 protein

Identifiers

PMID21647302
PMCPMC3107488
OpenAlexW2156672128

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.