Evidence map›Paper›PMID 21646924›Full record

ArticleMenopause (New York, N.Y.)2011

Gene expression signatures differ with extent of atherosclerosis in monkey iliac artery.

Kathleen M Eyster, Susan E Appt, Connie J Mark-Kappeler, Abha Chalpe, Thomas C Register, Thomas B Clarkson

Open access · greenAbstract read
In one paragraph

Article in Menopause (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Model-based clustering of multi-tissue gene expression data.Bioinformatics (Oxford, England) · 2020
    Article
  5. Effects of equol on gene expression in female cynomolgus monkey iliac arteries.Nutrition, metabolism, and cardiovascular diseases : NMCD · 2014
    Article
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kathleen M EysterDivision of Basic Biomedical Sciences, Sanford School of Medicine, Universityof South Dakota, Vermillion, SD 57069, USA. Kathleen.Eyster@usd.edu
Susan E Appt
Connie J Mark-Kappeler
Abha Chalpe
Thomas C Register
Thomas B Clarkson
University of South Dakota · US

Funding

Wichozani-A Healthy Lifestyle for Rural American Indian Youth through Cultural and Physical Activities: A Community-Based Participatory Research StudyP20GM103443 · NIGMS · UNIVERSITY OF SOUTH DAKOTA · PI Ryan Michael Johnson · 2012 to 2026
$58.1M
WESTCORE DNA SEQUENCING AND GENOTYPING CORE FACILITYP20RR016479 · NCRR · UNIVERSITY OF SOUTH DAKOTA · PI EICHLER, BARRETT · 2001 to 2011
$32.2M
PSYCHOPHYSIOLOGIC MECHANISMS-ESTROGEN/PROGESTIN EFFECTSP01HL045666 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KAPLAN, JAY R · 1991 to 2004
$10.9M
LABORATORY ANIMAL &COMPARATIVE MEDICINE TRAININGT32RR007009 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI CLINE, J. MARK · 1985 to 2011
$2.2M
Atherosclerosis Stage, Estrogen Receptors, and Vascular Responses to EstrogenR01AG028641 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI REGISTER, THOMAS COSTIN · 2007 to 2010
$1.2M
VASCULAR GENE EXPRESSION IN AGING WOMENR03AG018170 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI REGISTER, THOMAS COSTIN · 2000 to 2000
$73k
NCRR NIH HHS P20 RR016479NCRR NIH HHS T32 RR007009NCRR NIH HHS T32 RR07009NHLBI NIH HHS P01 HL045666NHLBI NIH HHS P01 HL 45666NIA NIH HHS AG28641NIA NIH HHS R01 AG028641NIA NIH HHS R03 AG018170NIGMS NIH HHS P20 GM103443
6 · The paper itself

Abstract

objectiveThe aim of this study was to evaluate global gene expression patterns in the common iliac arteries of monkeys with a varied extent of atherosclerosis.

methodsThe left common iliac artery was removed from ovariectomized cynomolgus monkeys (n = 12) after 6.5 years of consuming a diet containing fat and cholesterol at levels comparable with those consumed in Western populations. Arterial gene expression was analyzed using DNA microarray and real-time reverse transcription-polymerase chain reaction.

resultsSignificant differential expression of 986 genes was observed in iliac arteries containing moderate to large atherosclerotic plaques compared with normal/minimally affected reference group arteries. Atherosclerosis-associated genes included cytokines, chemokines, components of signal transduction pathways, and transcriptional activators and repressors, as well as other functional categories. Real-time reverse transcription-polymerase chain reaction confirmed a differential expression of genes chosen from a variety of functional categories. Specifically, the expression of genes for estrogen receptor-1, claudin 11, and brain heart protocadherin 7 was reduced, whereas the expression of genes for apolipoprotein E, growth differentiation factor 15, superoxide dismutase-2, SET domain bifurcated 2, phospholipase A2 group IIA, phospholipase A2 group VII, and ring finger protein 149 was increased in atherosclerotic arteries.

conclusionsThe gene expression environment in arteries containing atherosclerotic plaques is profoundly different from that of relatively unaffected arteries and reflects the cellular and molecular complexity of atherosclerosis and associated arterial remodeling processes.

Indexed as

Gene Expression ProfilingAnimalsApolipoproteins EAtherosclerosisCadherinsClaudinsDietary FatsDisease Models, AnimalEstrogen Receptor alphaFemaleGrowth Differentiation Factor 15Histone-Lysine N-MethyltransferaseIliac ArteryMacaca fascicularisOvariectomyPhospholipases A2Apolipoproteins ECadherinsClaudinsDietary FatsEstrogen Receptor alphaGrowth Differentiation Factor 15Histone-Lysine N-MethyltransferasePhospholipases A2Superoxide DismutaseSuperoxide Dismutase 2

Identifiers

PMID21646924
PMCPMC3183138
OpenAlexW2322178878

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.