Evidence map›Paper›PMID 21646396›Full record

ArticleThe Journal of experimental medicine2011

Interaction of the gp120 V1V2 loop with a neighboring gp120 unit shields the HIV envelope trimer against cross-neutralizing antibodies.

Peter Rusert, Anders Krarup, Carsten Magnus, Oliver F Brandenberg, Jacqueline Weber, Anna-Katharina Ehlert, Roland R Regoes, Huldrych F Günthard, Alexandra Trkola

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed.

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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Peter RusertInstitute of Medical Virology, University Hospital Zurich; University of Zurich, 8006 Zurich, Switzerland.
Anders Krarup
Carsten Magnus
Oliver F Brandenberg
Jacqueline Weber
Anna-Katharina Ehlert
Roland R Regoes
Huldrych F Günthard
Alexandra Trkola

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The HIV-1 envelope trimer adopts a quaternary conformation that effectively shields neutralization-sensitive domains and thus represents a major obstacle for natural and vaccine-elicited antibody responses. By using a structure-function analysis based on a specifically devised mathematical model, we demonstrate in this study that protection from neutralization is enforced by intersubunit contact between the variable loops 1 and 2 (V1V2) and domains of neighboring gp120 subunits in the trimer encompassing the V3 loop. Our data are consistent with an interaction of the V1V2 and V3 loop at the spike apex as proposed by cryoelectron tomography experiments. By defining the orientation of the V1V2 loop within the trimer toward the neighboring gp120 subunit's V3 loop, our data close an important gap in the understanding of the architecture of the trimeric spike. Knowledge on how the V1V2 barrier functions in the context of the trimer to mask conserved epitopes on gp120 may aid future vaccine design.

Indexed as

Amino Acid SequenceAntibodies, NeutralizingBase SequenceCell LineCross ReactionsDNA, ViralEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansModels, ImmunologicalModels, MolecularMolecular Sequence DataPeptide FragmentsProtein Interaction Domains and MotifsAntibodies, NeutralizingDNA, ViralEpitopesHIV AntibodiesHIV Envelope Protein gp120HIV envelope protein gp120 (135-148)Peptide Fragments

Identifiers

PMID21646396
PMCPMC3135368

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.