Evidence map›Paper›PMID 21643991›Full record

ArticlePlanta2011

Evolutionary significance of an algal gene encoding an [FeFe]-hydrogenase with F-domain homology and hydrogenase activity in Chlorella variabilis NC64A.

Jonathan E Meuser, Eric S Boyd, Gennady Ananyev, Devin Karns, Randor Radakovits, U M Narayana Murthy, Maria L Ghirardi, G Charles Dismukes, John W Peters, Matthew C Posewitz

Abstract read
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In one paragraph

Article in Planta, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 61 citations in OpenAlex.

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  11. Flavodiiron-Mediated OPlant physiology · 2018
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  19. Fermentation metabolism and its evolution in algae.Frontiers in plant science · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Jonathan E MeuserDivision of Environmental Science and Engineering, Colorado School of Mines, Golden, CO 80401, USA.
Eric S Boyd
Gennady Ananyev
Devin Karns
Randor Radakovits
U M Narayana Murthy
Maria L Ghirardi
G Charles Dismukes
John W Peters
Matthew C Posewitz
Colorado School of Mines · USMontana State University · USNational Renewable Energy Laboratory · USRutgers, The State University of New Jersey · USUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[FeFe]-hydrogenases (HYDA) link the production of molecular H(2) to anaerobic metabolism in many green algae. Similar to Chlamydomonas reinhardtii, Chlorella variabilis NC64A (Trebouxiophyceae, Chlorophyta) exhibits [FeFe]-hydrogenase (HYDA) activity during anoxia. In contrast to C. reinhardtii and other chlorophycean algae, which contain hydrogenases with only the HYDA active site (H-cluster), C. variabilis NC64A is the only known green alga containing HYDA genes encoding accessory FeS cluster-binding domains (F-cluster). cDNA sequencing confirmed the presence of F-cluster HYDA1 mRNA transcripts, and identified deviations from the in silico splicing models. We show that HYDA activity in C. variabilis NC64A is coupled to anoxic photosynthetic electron transport (PSII linked, as well as PSII-independent) and dark fermentation. We also show that the in vivo H(2)-photoproduction activity observed is as O(2) sensitive as in C. reinhardtii. The two C. variabilis NC64A HYDA sequences are similar to homologs found in more deeply branching bacteria (Thermotogales), diatoms, and heterotrophic flagellates, suggesting that an F-cluster HYDA is the ancestral enzyme in algae. Phylogenetic analysis indicates that the algal HYDA H-cluster domains are monophyletic, suggesting that they share a common origin, and evolved from a single ancestral F-cluster HYDA. Furthermore, phylogenetic reconstruction indicates that the multiple algal HYDA paralogs are the result of gene duplication events that occurred independently within each algal lineage. Collectively, comparative genomic, physiological, and phylogenetic analyses of the C. variabilis NC64A hydrogenase has provided new insights into the molecular evolution and diversity of algal [FeFe]-hydrogenases.

Indexed as

Evolution, MolecularAmino Acid SequenceBase SequenceCell HypoxiaChlamydomonas reinhardtiiChlorellaChlorophyllCulture MediaDarknessDNA, ComplementaryDNA, PlantFermentationGene Expression Regulation, EnzymologicGene Expression Regulation, PlantGenomicsHydrogenChlorophyllCulture MediaDNA, ComplementaryDNA, PlantHydrogenHydrogenaseiron hydrogenaseIron-Sulfur ProteinsNADOxygenPlant ProteinsRecombinant ProteinsRNA, Plant

Identifiers

PMID21643991
OpenAlexW2054730243

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.