Evidence map›Paper›PMID 21643955›Full record

ArticleMolecular biology reports2012

Microarray analysis of differentially expressed background genes in rats following hemorrhagic shock.

Yu Xiaojun, Qian Cheng, Zhang Yuxing, Hu Zhiqian

Abstract read
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In one paragraph

Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yu XiaojunDepartment of General Surgery, Changzheng Hospital Affiliated To Second Military Medical University, 415# Fengyang Road, 200003 Shanghai, People's Republic of China.
Qian Cheng
Zhang Yuxing
Hu Zhiqian
Second Military Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To uncover the contribution of the diversity of the genetic backgrounds to the pathogenesis of hemorrhagic shock, we employed male Sprague-Dawley rats to establish a controlled 2.5 ml/100 g total body weight fixed-volume hemorrhagic shock and left lobular hepatectomy model. RNA was isolated from the liver samples taken from the rats (survival group: rats survived over 24 h after shock; and dead group: rats died within 1 h after shock, n = 3 per group), and subjected to microarray using the illumina(TM) chips for rat cDNA (27,342 genes, >700,000 probes). The results demonstrated that the rats had about 50% survival rate and 100 genes were identified differentially expressed in the two groups. Of these genes, 47 genes were up-regulated and 53 genes down-regulated. Real-time PCR confirmed the differential expression for Aldh1a1, Aldh1a7, Aoc3, Cyp26al, Hdc and Ephx2 genes. Pathway analysis revealed that these genes are involved in circadian rhythm, beta-Alanine metabolism, histidine metabolism, biosynthesis of unsaturated fatty acids, glycine, serine and threonine metabolism, vitamin B6 metabolism, as well as arginine and proline metabolism. Therefore, our study provided a global molecular view on the contribution of genetic backgrounds to the response to hemorrhagic shock.

Indexed as

Genetic VariationAldehyde Dehydrogenase 1 FamilyAmine Oxidase (Copper-Containing)AnimalsCell Adhesion MoleculesCytochrome P-450 Enzyme SystemDNA PrimersEpoxide HydrolasesFluorescenceGene Expression RegulationHepatectomyLiverMaleMetabolic Networks and PathwaysMicroarray AnalysisRatsAldehyde Dehydrogenase 1 FamilyAldh1a1 protein, ratAmine Oxidase (Copper-Containing)Cell Adhesion MoleculesCytochrome P-450 Enzyme SystemDNA PrimersEPHX2 protein, ratEpoxide HydrolasesRetinal DehydrogenaseRetinoic Acid 4-HydroxylaseRNAvascular adhesion protein-1, rat

Identifiers

PMID21643955
OpenAlexW2091087428

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.