Evidence map›Paper›PMID 21643747›Full record

ArticleMolecular biology reports2012

In vivo analysis of translation initiation sites in Plasmodium falciparum.

Balakota Reddy Patakottu, Prashant Kumar Singh, Pawan Malhotra, V S Chauhan, Swati Patankar

Abstract read
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In one paragraph

Article in Molecular biology reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Heterologous expression inFEBS open bio · 2018
    Article
  3. Article
  4. Translational regulation during stage transitions in malaria parasites.Annals of the New York Academy of Sciences · 2015
    Review
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Balakota Reddy PatakottuDepartment of Biosciences & Bioengineering, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
Prashant Kumar Singh
Pawan Malhotra
V S Chauhan
Swati Patankar
Centro de Ingeniería Genética y Biotecnología · CUIndian Institute of Technology Bombay · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulation of gene expression in the malaria parasite Plasmodium falciparum is tightly controlled and little is known about the many steps involved. One step i.e. translation initiation is also poorly understood and in P. falciparum, choice of the translation initiation site (TIS) is a critical decision largely due to the high frequency of AUGs in the relatively long 5' untranslated regions of parasite mRNAs. The sequences surrounding the TIS have a major role to play in translation initiation and this report evaluates these sequences by mutational analysis of the heat shock protein 86 gene, transient transfection and reporter assays in the parasite. We find that purines at the -3 and +4 positions are essential for efficient translation in P. falciparum, similar to other eukaryotes. Interestingly, a U at the -1 position results in 2.5-fold higher reporter activity compared to wild type. Certain classes of protein biosynthetic genes show higher frequencies of U at the -1 position, suggesting that these genes may exhibit higher levels of translation. This work defines the optimal sequences for TIS choice and has implications for the design of efficient expression vectors in an important human pathogen.

Indexed as

Base SequenceCloning, MolecularDNA PrimersGene Expression RegulationGenetic VectorsHSP90 Heat-Shock ProteinsLuciferasesMolecular Sequence DataMutagenesisPeptide Chain Initiation, TranslationalPlasmodium falciparumRNA, MessengerSequence Analysis, DNADNA PrimersHSP90 Heat-Shock ProteinsLuciferasesRNA, Messenger

Identifiers

PMID21643747
OpenAlexW2073073395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.