Evidence map›Paper›PMID 21642980›Full record

ArticleNature cell biology2011

A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly.

Dragomir B Krastev, Mikolaj Slabicki, Maciej Paszkowski-Rogacz, Nina C Hubner, Magno Junqueira, Andrej Shevchenko, Matthias Mann, Karla M Neugebauer, Frank Buchholz

Abstract read
PubMed Publisher
In one paragraph

Article in Nature cell biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Genomic gain ofScience advances · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Dragomir B KrastevUniversity of Technology Dresden, University Hospital and Medical Faculty Carl Gustav Carus, Department of Medical Systems Biology, Fetscherstraße 74, D-01307 Dresden, Germany.
Mikolaj Slabicki
Maciej Paszkowski-Rogacz
Nina C Hubner
Magno Junqueira
Andrej Shevchenko
Matthias Mann
Karla M Neugebauer
Frank Buchholz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TP53 (tumour protein 53) is one of the most frequently mutated genes in human cancer and its role during cellular transformation has been studied extensively. However, the homeostatic functions of p53 are less well understood. Here, we explore the molecular dependency network of TP53 through an RNAi-mediated synthetic interaction screen employing two HCT116 isogenic cell lines and a genome-scale endoribonuclease-prepared short interfering RNA library. We identify a variety of TP53 synthetic interactions unmasking the complex connections of p53 to cellular physiology and growth control. Molecular dissection of the TP53 synthetic interaction with UNRIP indicates an enhanced dependency of TP53-negative cells on small nucleolar ribonucleoprotein (snoRNP) assembly. This dependency is mediated by the snoRNP chaperone gene NOLC1 (also known as NOPP140), which we identify as a physiological p53 target gene. This unanticipated function of TP53 in snoRNP assembly highlights the potential of RNAi-mediated synthetic interaction screens to dissect molecular pathways of tumour suppressor genes.

Indexed as

RNA InterferenceCell ProliferationColorectal NeoplasmsGene Expression Regulation, NeoplasticHCT116 CellsHigh-Throughput Screening AssaysHumansMicroscopy, FluorescenceMicroscopy, VideoNeoplasm ProteinsNuclear ProteinsPhosphoproteinsRibonucleoproteins, Small NucleolarRNA-Binding ProteinsSignal TransductionSMN Complex ProteinsNeoplasm ProteinsNOLC1 protein, humanNuclear ProteinsPhosphoproteinsRibonucleoproteins, Small NucleolarRNA-Binding ProteinsSMN Complex ProteinsSTRAP protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID21642980

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.