Evidence map›Paper›PMID 21642405›Full record

ArticleApplied and environmental microbiology2011

Identification of loci and functional characterization of trichothecene biosynthesis genes in filamentous fungi of the genus Trichoderma.

R E Cardoza, M G Malmierca, M R Hermosa, N J Alexander, S P McCormick, R H Proctor, A M Tijerino, A Rumbero, E Monte, S Gutiérrez

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 1 synthesis or guideline pooled it, 142 citations in OpenAlex.

  1. BioprospectingFrontiers in fungal biology · 2021
    Pooled it
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  9. Review
  10. Review
  11. Spores ofInsects · 2022
    Article
  12. Article
  13. Review
  14. Effects of trichothecene production byFrontiers in plant science · 2022
    Article
  15. Frontiers in fungal biology · 2022
    Review
  16. Article
  17. Review
  18. Review
  19. Verification ofFrontiers in microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

R E CardozaArea of Microbiology, University School of Agricultural Engineers, University of León, Campus de Ponferrada, Avda. Astorga s/n, 24400 Ponferrada, Spain.
M G Malmierca
M R Hermosa
N J Alexander
S P McCormick
R H Proctor
A M Tijerino
A Rumbero
E Monte
S Gutiérrez
National Center for Agricultural Utilization Research · USUniversidad de León · ESUniversidad de Salamanca · ESUniversidad Autónoma de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichothecenes are mycotoxins produced by Trichoderma, Fusarium, and at least four other genera in the fungal order Hypocreales. Fusarium has a trichothecene biosynthetic gene (TRI) cluster that encodes transport and regulatory proteins as well as most enzymes required for the formation of the mycotoxins. However, little is known about trichothecene biosynthesis in the other genera. Here, we identify and characterize TRI gene orthologues (tri) in Trichoderma arundinaceum and Trichoderma brevicompactum. Our results indicate that both Trichoderma species have a tri cluster that consists of orthologues of seven genes present in the Fusarium TRI cluster. Organization of genes in the cluster is the same in the two Trichoderma species but differs from the organization in Fusarium. Sequence and functional analysis revealed that the gene (tri5) responsible for the first committed step in trichothecene biosynthesis is located outside the cluster in both Trichoderma species rather than inside the cluster as it is in Fusarium. Heterologous expression analysis revealed that two T. arundinaceum cluster genes (tri4 and tri11) differ in function from their Fusarium orthologues. The Tatri4-encoded enzyme catalyzes only three of the four oxygenation reactions catalyzed by the orthologous enzyme in Fusarium. The Tatri11-encoded enzyme catalyzes a completely different reaction (trichothecene C-4 hydroxylation) than the Fusarium orthologue (trichothecene C-15 hydroxylation). The results of this study indicate that although some characteristics of the tri/TRI cluster have been conserved during evolution of Trichoderma and Fusarium, the cluster has undergone marked changes, including gene loss and/or gain, gene rearrangement, and divergence of gene function.

Indexed as

DNA, FungalFungal ProteinsFusariumGene Expression Regulation, FungalGenes, FungalMolecular Sequence DataMultigene FamilyMycotoxinsPolymerase Chain ReactionSequence AlignmentTrichodermaTrichothecenesDNA, FungalFungal ProteinsMycotoxinsTrichothecenes

Identifiers

PMID21642405
PMCPMC3147405
OpenAlexW1970231827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.