Evidence map›Paper›PMID 21637784›Full record

ArticlePLoS genetics2011

Association of genetic variants in complement factor H and factor H-related genes with systemic lupus erythematosus susceptibility.

Jian Zhao, Hui Wu, Melanie Khosravi, Huijuan Cui, Xiaoxia Qian, Jennifer A Kelly, Kenneth M Kaufman, Carl D Langefeld, Adrienne H Williams, Mary E Comeau and 47 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed, 2 pooled it
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 2 syntheses or guidelines pooled it, 225 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Interaction of miR-181b andBioMed research international · 2020
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  12. The Complement System.Advances in experimental medicine and biology · 2025
    Review
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  20. Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

57 authors at 19 institutions in 9 countries.

Jian ZhaoDivision of Rheumatology, Department of Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, United States of America.
Hui Wu
Melanie Khosravi
Huijuan Cui
Xiaoxia Qian
Jennifer A Kelly
Kenneth M Kaufman
Carl D Langefeld
Adrienne H Williams
Mary E Comeau
Julie T Ziegler
Miranda C Marion
Adam Adler
Stuart B Glenn
Marta E Alarcón-Riquelme
BIOLUPUS Network
GENLES Network
Bernardo A Pons-Estel
John B Harley
Sang-Cheol Bae
So-Young Bang
Soo-Kyung Cho
Chaim O Jacob
Timothy J Vyse
Timothy B Niewold
Patrick M Gaffney
Kathy L Moser
Robert P Kimberly
Jeffrey C Edberg
Elizabeth E Brown
Graciela S Alarcon
Michelle A Petri
Rosalind Ramsey-Goldman
Luis M Vilá
John D Reveille
Judith A James
Gary S Gilkeson
Diane L Kamen
Barry I Freedman
Juan-Manuel Anaya
Joan T Merrill
Lindsey A Criswell
R Hal Scofield
Anne M Stevens
Joel M Guthridge
Deh-Ming Chang
Yeong Wook Song
Ji Ah Park
Eun Young Lee
Susan A Boackle
Jennifer M Grossman
Bevra H Hahn
Timothy H J Goodship
Rita M Cantor
Chack-Yung Yu
Nan Shen
Betty P Tsao
University of California, Los Angeles · USOklahoma Medical Research Foundation · USSeoul National University · KRWake Forest University · USMedical University of South Carolina · USShanghai Jiao Tong University · CNUnited States Department of Veterans Affairs · USCentro Científico Tecnólogico - Rosario · ARCincinnati Children's Hospital Medical Center · USJohns Hopkins University · USKing's College London · GBNorthwestern University · USSeattle Children's Hospital · USUniversity of Alabama at Birmingham · USUniversity of Southern California · USHanyang University Seoul Hospital · KRThe Ohio State University · USUniversity of California, San Francisco · USUniversity of Puerto Rico, Medical Sciences Campus · PR

Funding

Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
The Interplay of Sociodemographic and Genetic Factors in SLE Health DisparitiesP60AR053308 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI YELIN, EDWARD H · 2006 to 2016
$11.8M
SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
SequencingP01AI083194 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2009 to 2013
$9.6M
Medical Research Council G0701325NCATS NIH HHS UL1 TR000154NCI NIH HHS R01 CA141700NCI NIH HHS R01CA141700NCRR NIH HHS I ULI RR025014-02NCRR NIH HHS M01 RR000079NCRR NIH HHS M01RR00079NCRR NIH HHS P20 RR015577NCRR NIH HHS P20RR015577NCRR NIH HHS P20 RR020143NCRR NIH HHS P20RR020143NCRR NIH HHS P30 RR031152NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1RR025005NCRR NIH HHS UL1 RR025014NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1RR025741NCRR NIH HHS UL1 RR029882NCRR NIH HHS UL1RR029882NIAID NIH HHS K08 AI083790NIAID NIH HHS K08AI083790NIAID NIH HHS K24 AI078004NIAID NIH HHS N01 AI050026NIAID NIH HHS P01 AI083194NIAID NIH HHS P01AI083194NIAID NIH HHS R01 AI063274NIAID NIH HHS R01AI063274NIAID NIH HHS R21 AI070304NIAID NIH HHS R21AI070304NIAID NIH HHS R37 AI024717NIAID NIH HHS R37AI024717NIAID NIH HHS U19 AI082714NIAID NIH HHS U19AI082714NIAMS NIH HHS AR43727NIAMS NIH HHS K24 AR002138NIAMS NIH HHS K24AR002138NIAMS NIH HHS N01 AR062277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01AR049084NIAMS NIH HHS P01AR49084NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30AR053483NIAMS NIH HHS P602AR30692NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR049459NIAMS NIH HHS P60AR049459NIAMS NIH HHS P60 AR053308NIAMS NIH HHS P60AR053308NIAMS NIH HHS R01 AR033062NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01AR042460NIAMS NIH HHS R01 AR043274NIAMS NIH HHS R01AR043274NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR043814NIAMS NIH HHS R01AR043814NIAMS NIH HHS R01 AR051545NIAMS NIH HHS R01AR051545-01A2NIAMS NIH HHS R01 AR054459NIAMS NIH HHS R01AR054459NIAMS NIH HHS R01AR33062NIAMS NIH HHS RC1 AR058554NIAMS NIH HHS RC1AR058554NIAMS NIH HHS RC1 AR058621NIAMS NIH HHS RC1AR058621NIGMS NIH HHS P30 GM103510PHS HHS LRPAI071651Wellcome Trust
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE), a complex polygenic autoimmune disease, is associated with increased complement activation. Variants of genes encoding complement regulator factor H (CFH) and five CFH-related proteins (CFHR1-CFHR5) within the chromosome 1q32 locus linked to SLE, have been associated with multiple human diseases and may contribute to dysregulated complement activation predisposing to SLE. We assessed 60 SNPs covering the CFH-CFHRs region for association with SLE in 15,864 case-control subjects derived from four ethnic groups. Significant allelic associations with SLE were detected in European Americans (EA) and African Americans (AA), which could be attributed to an intronic CFH SNP (rs6677604, in intron 11, P(meta) = 6.6×10(-8), OR = 1.18) and an intergenic SNP between CFHR1 and CFHR4 (rs16840639, P(meta) = 2.9×10(-7), OR = 1.17) rather than to previously identified disease-associated CFH exonic SNPs, including I62V, Y402H, A474A, and D936E. In addition, allelic association of rs6677604 with SLE was subsequently confirmed in Asians (AS). Haplotype analysis revealed that the underlying causal variant, tagged by rs6677604 and rs16840639, was localized to a ~146 kb block extending from intron 9 of CFH to downstream of CFHR1. Within this block, the deletion of CFHR3 and CFHR1 (CFHR3-1Δ), a likely causal variant measured using multiplex ligation-dependent probe amplification, was tagged by rs6677604 in EA and AS and rs16840639 in AA, respectively. Deduced from genotypic associations of tag SNPs in EA, AA, and AS, homozygous deletion of CFHR3-1Δ (P(meta) = 3.2×10(-7), OR = 1.47) conferred a higher risk of SLE than heterozygous deletion (P(meta) = 3.5×10(-4), OR = 1.14). These results suggested that the CFHR3-1Δ deletion within the SLE-associated block, but not the previously described exonic SNPs of CFH, might contribute to the development of SLE in EA, AA, and AS, providing new insights into the role of complement regulators in the pathogenesis of SLE.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAllelesAntigens, NeoplasmAsian PeopleBiomarkers, TumorBlack or African AmericanCase-Control StudiesChromosomes, Human, Pair 1Complement Factor HGene DeletionGene FrequencyGenotypeHispanic or LatinoHumansIntronsAntigens, NeoplasmBiomarkers, Tumorbladder tumor-associated antigenComplement Factor H

Identifiers

PMID21637784
PMCPMC3102741
OpenAlexW2080636057

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.