Evidence map›Paper›PMID 21637783›Full record

ArticlePloS one2011

Microsatellite instability in pediatric high grade glioma is associated with genomic profile and differential target gene inactivation.

Marta Viana-Pereira, Alicia Lee, Sergey Popov, Dorine A Bax, Safa Al-Sarraj, Leslie R Bridges, João N Stávale, Darren Hargrave, Chris Jones, Rui M Reis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 52 citations in OpenAlex.

  1. Trial
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  6. Article
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  8. Review
  9. Immunohistochemical screening for mismatch repair protein deficiency in paediatric high-grade gliomas - institutional experience and review of literature.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Review
  10. Article
  11. Review
  12. Article
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  16. Article
  17. Article
  18. Histone turnover and chromatin accessibility: Critical mediators of neurological development, plasticity, and disease.BioEssays : news and reviews in molecular, cellular and developmental biology · 2016
    Article
  19. Article
  20. SPINT2 Deregulation in Prostate Carcinoma.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

Marta Viana-PereiraLife and Health Sciences Research Institute (ICVS), School of Health Sciences, University of Minho, Braga, Portugal.
Alicia Lee
Sergey Popov
Dorine A Bax
Safa Al-Sarraj
Leslie R Bridges
João N Stávale
Darren Hargrave
Chris Jones
Rui M Reis
Institute of Cancer Research · GBHospital de Câncer de Barretos · BRKing's College Hospital · GBRoyal Marsden Hospital · GBRoyal Marsden NHS Foundation Trust · GBSt George's Hospital · GBUniversidade Federal de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High grade gliomas (HGG) are one of the leading causes of cancer-related deaths in children, and there is increasing evidence that pediatric HGG may harbor distinct molecular characteristics compared to adult tumors. We have sought to clarify the role of microsatellite instability (MSI) in pediatric versus adult HGG. MSI status was determined in 144 patients (71 pediatric and 73 adults) using a well established panel of five quasimonomorphic mononucleotide repeat markers. Expression of MLH1, MSH2, MSH6 and PMS2 was determined by immunohistochemistry, MLH1 was assessed for mutations by direct sequencing and promoter methylation using MS-PCR. DNA copy number profiles were derived using array CGH, and mutations in eighteen MSI target genes studied by multiplex PCR and genotyping. MSI was found in 14/71 (19.7%) pediatric cases, significantly more than observed in adults (5/73, 6.8%; p = 0.02, Chi-square test). MLH1 expression was downregulated in 10/13 cases, however no mutations or promoter methylation were found. MSH6 was absent in one pediatric MSI-High tumor, consistent with an inherited mismatch repair deficiency associated with germline MSH6 mutation. MSI was classed as Type A, and associated with a remarkably stable genomic profile. Of the eighteen classic MSI target genes, we identified mutations only in MSH6 and DNAPKcs and described a polymorphism in MRE11 without apparent functional consequences in DNA double strand break detection and repair. This study thus provides evidence for a potential novel molecular pathway in a proportion of gliomas associated with the presence of MSI.

Indexed as

Gene SilencingMicrosatellite InstabilityAdolescentAdultAgedBase SequenceChildDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA Mismatch RepairFemaleFrameshift MutationGenes, NeoplasmGenome, HumanGliomaHumansDNA-Binding ProteinsMRE11 Homologue ProteinMRE11 protein, human

Identifiers

PMID21637783
PMCPMC3102740
OpenAlexW1975724024

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.