ArticleBioinformatics (Oxford, England)2011
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).
Article in Bioinformatics (Oxford, England), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- Article
- Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources.PLoS computational biology · 2016Article
- Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment.BMC bioinformatics · 2015Article
- Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response.PLoS computational biology · 2015Article
- PathVisio 3: an extendable pathway analysis toolbox.PLoS computational biology · 2015Article
- Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype.PloS one · 2014Article
- SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism.Genome integrity · 2013Article
- PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.Bioinformatics (Oxford, England) · 2012Article
- Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes.PloS one · 2012Article
- A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method.BMC bioinformatics · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
motivationA plugin for the Java-based PathVisio pathway editor has been developed to help users draw diagrams of bioregulatory networks according to the Molecular Interaction Map (MIM) notation. Together with the core PathVisio application, this plugin presents a simple to use and cross-platform application for the construction of complex MIM diagrams with the ability to annotate diagram elements with comments, literature references and links to external databases. This tool extends the capabilities of the PathVisio pathway editor by providing both MIM-specific glyphs and support for a MIM-specific markup language file format for exchange with other MIM-compatible tools and diagram validation. AVAILABILITY: The PathVisio-MIM plugin is freely available and works with versions of PathVisio 2.0.11 and later on Windows, Mac OS X and Linux. Information about MIM notation and the MIMML format is available at http://discover.nci.nih.gov/mim. The plugin, along with diagram examples, instructions and Java source code, may be downloaded at http://discover.nci.nih.gov/mim/mim_pathvisio.html.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.