Evidence map›Paper›PMID 21632548›Full record

ArticleThe Journal of biological chemistry2011

Enzyme reactivation by hydrogen peroxide in heme-based tryptophan dioxygenase.

Rong Fu, Rupal Gupta, Jiafeng Geng, Kednerlin Dornevil, Siming Wang, Yong Zhang, Michael P Hendrich, Aimin Liu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. A new regime of heme-dependent aromatic oxygenase superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  4. Review
  5. Conformational Plasticity in Human Heme-Based Dioxygenases.Journal of the American Chemical Society · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2017
    Review
  17. A short history of heme dioxygenases: rise, fall and rise again.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2017
    Review
  18. Article
  19. Bis-Fe(IV): nature's sniper for long-range oxidation.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rong FuDepartment of Chemistry, Georgia State University, Atlanta, Georgia 30303, USA.
Rupal Gupta
Jiafeng Geng
Kednerlin Dornevil
Siming Wang
Yong Zhang
Michael P Hendrich
Aimin Liu
Georgia State University · USCarnegie Mellon University · USStevens Institute of Technology · US

Funding

EPR and Mossbauer Characterization of Mn and Fe Proteins, Models, IntermediatesR01GM077387 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI HENDRICH, MICHAEL P · 2006 to 2019
$2.9M
Structure, Spectra, and Roles of Metal and Active Site in HNO Heme Protein CompleR15GM085774 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI ZHANG, YONG · 2008 to 2021
$1.4M
NIGMS NIH HHS GM077387NIGMS NIH HHS GM085774NIGMS NIH HHS R01 GM077387NIGMS NIH HHS R15 GM085774
6 · The paper itself

Abstract

An intriguing mystery about tryptophan 2,3-dioxygenase is its hydrogen peroxide-triggered enzyme reactivation from the resting ferric oxidation state to the catalytically active ferrous form. In this study, we found that such an odd Fe(III) reduction by an oxidant depends on the presence of L-Trp, which ultimately serves as the reductant for the enzyme. In the peroxide reaction with tryptophan 2,3-dioxygenase, a previously unknown catalase-like activity was detected. A ferryl species (δ = 0.055 mm/s and ΔE(Q) = 1.755 mm/s) and a protein-based free radical (g = 2.0028 and 1.72 millitesla linewidth) were characterized by Mössbauer and EPR spectroscopy, respectively. This is the first compound ES-type of ferryl intermediate from a heme-based dioxygenase characterized by EPR and Mössbauer spectroscopy. Density functional theory calculations revealed the contribution of secondary ligand sphere to the spectroscopic properties of the ferryl species. In the presence of L-Trp, the reactivation was demonstrated by enzyme assays and by various spectroscopic techniques. A Trp-Trp dimer and a monooxygenated L-Trp were both observed as the enzyme reactivation by-products by mass spectrometry. Together, these results lead to the unraveling of an over 60-year old mystery of peroxide reactivation mechanism. These results may shed light on how a metalloenzyme maintains its catalytic activity in an oxidizing environment.

Indexed as

Bacterial ProteinsCatalaseCupriavidusElectron Spin Resonance SpectroscopyEnzyme ReactivatorsHydrogen PeroxideIronOxidation-ReductionTryptophan OxygenaseBacterial ProteinsCatalaseEnzyme ReactivatorsHydrogen PeroxideIronTryptophan Oxygenase

Identifiers

PMID21632548
PMCPMC3143619
OpenAlexW2149364216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.