Evidence map›Paper›PMID 21632291›Full record

ArticleIEEE transactions on bio-medical engineering2011

Multiscale modeling of calcium dynamics in ventricular myocytes with realistic transverse tubules.

Zeyun Yu, Guangming Yao, Masahiko Hoshijima, Anushka Michailova, Michael Holst

Abstract read
In one paragraph

Article in IEEE transactions on bio-medical engineering, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Computational modeling of subcellular transport and signaling.Current opinion in structural biology · 2014
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zeyun YuDepartment of Computer Science, University of Wisconsin-Milwaukee, Milwaukee, WI 53211, USA. yuz@uwm.edu
Guangming Yao
Masahiko Hoshijima
Anushka Michailova
Michael Holst

Funding

VISUALIZATION TOOLS FOR AUTOMATED MOLECULAR MICROSCOPYP41RR008605 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PAPADOPOULOS, PHILIP · 1994 to 2011
$28.1M
Image-Based Modeling of Ca2+ Signaling in Ventricular MyocytesR15HL103497 · NHLBI · UNIVERSITY OF WISCONSIN MILWAUKEE · PI YU, ZEYUN · 2010 to 2010
$364k
NCRR NIH HHS P41 RR008605NCRR NIH HHS P41 RR08605NHLBI NIH HHS R15 HL103497NHLBI NIH HHS R15HL103497
6 · The paper itself

Abstract

Spatial-temporal Ca(2+) dynamics due to Ca(2+) release, buffering, and reuptaking plays a central role in studying excitation-contraction (E-C) coupling in both normal and diseased cardiac myocytes. In this paper, we employ two numerical methods, namely, the meshless method and the finite element method, to model such Ca(2+) behaviors by solving a nonlinear system of reaction-diffusion partial differential equations at two scales. In particular, a subcellular model containing several realistic transverse tubules (or t-tubules) is investigated and assumed to reside at different locations relative to the cell membrane. To this end, the Ca(2+) concentration calculated from the whole-cell modeling is adopted as part of the boundary constraint in the subcellular model. The preliminary simulations show that Ca(2+) concentration changes in ventricular myocytes are mainly influenced by calcium release from t-tubules.

Indexed as

Calcium SignalingModels, BiologicalAnimalsCalciumCells, CulturedComputational BiologyComputer SimulationFinite Element AnalysisMiceMyocytes, CardiacSarcolemmaCalcium

Identifiers

PMID21632291
PMCPMC3179564

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.