ArticleGenome research2011
A reduced representation approach to population genetic analyses and applications to human evolution.
Article in Genome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
24 citing papers in PubMed.
- Genotyping-by-sequencing informs conservation of Andean palms sources of non-timber forest products.Evolutionary applications · 2024Article
- 3D-GBS: a universal genotyping-by-sequencing approach for genomic selection and other high-throughput low-cost applications in species with small to medium-sized genomes.Plant methods · 2023Article
- Capturing Genetic Diversity in Seed Collections: An Empirical Study of Two Congeners with Contrasting Mating Systems.Plants (Basel, Switzerland) · 2023Article
- Genomics reveal population structure, evolutionary history, and signatures of selection in the northern bottlenose whale, Hyperoodon ampullatus.Molecular ecology · 2022Article
- A quantification method of somatic mutations in normal tissues and their accumulation in pediatric patients with chemotherapy.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Comparative study of population genomic approaches for mapping colony-level traits.PLoS computational biology · 2020Article
- NanoGBS: A Miniaturized Procedure for GBS Library Preparation.Frontiers in genetics · 2020Article
- Review
- Discovery of SNPs for individual identification by reduced representation sequencing of moose (Alces alces).PloS one · 2018Article
- Enrichment of megabase-sized DNA molecules for single-molecule optical mapping and next-generation sequencing.Scientific reports · 2017Article
- How and how much does RAD-seq bias genetic diversity estimates?BMC evolutionary biology · 2016Article
- GBStools: A Statistical Method for Estimating Allelic Dropout in Reduced Representation Sequencing Data.PLoS genetics · 2016Article
- Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research.The American journal of tropical medicine and hygiene · 2015Article
- The impact of genomics on population genetics of parasitic diseases.Current opinion in microbiology · 2015Review
- Brazilian Anopheles darlingi Root (Diptera: Culicidae) Clusters by Major Biogeographical Region.PloS one · 2015Article
- Genomic analyses of three malaria vectors reveals extensive shared polymorphism but contrasting population histories.Molecular biology and evolution · 2014Article
- The impact of whole-genome sequencing on the reconstruction of human population history.Nature reviews. Genetics · 2014Review
- Article
- A combinatorial approach to the restriction of a mouse genome.BMC research notes · 2013Article
- A genome-wide survey of genetic variation in gorillas using reduced representation sequencing.PloS one · 2013Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
Second-generation sequencing technologies allow surveys of sequence variation on an unprecedented scale. However, despite the rapid decrease in sequencing costs, collecting whole-genome sequence data on a population scale is still prohibitive for many laboratories. We have implemented an inexpensive, reduced representation protocol for preparing resequencing targets, and we have developed the analytical tools necessary for making population genetic inferences. This approach can be applied to any species for which a draft or complete reference genome sequence is available. The new tools we have developed include methods for aligning reads, calling genotypes, and incorporating sample-specific sequencing error rates in the estimate of evolutionary parameters. When applied to 19 individuals from a total of 18 human populations, our approach allowed sampling regions that are largely overlapping across individuals and that are representative of the entire genome. The resequencing data were used to test the serial founder model of human dispersal and to estimate the time of the Out of Africa migration. Our results also represent the first attempt to provide a time frame for the colonization of Australia based on large-scale resequencing data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.