Evidence map›Paper›PMID 21625576›Full record

ArticlePLoS pathogens2011

Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants.

Nicholas Renzette, Bornali Bhattacharjee, Jeffrey D Jensen, Laura Gibson, Timothy F Kowalik

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 213 citations in OpenAlex.

  1. Cytomegalovirus Genetic Diversity Following Primary Infection.The Journal of infectious diseases · 2020
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  19. Genomic and geographical structure of human cytomegalovirus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nicholas RenzetteDepartment of Microbiology and Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts, United States of America.
Bornali Bhattacharjee
Jeffrey D Jensen
Laura Gibson
Timothy F Kowalik
University of Massachusetts Chan Medical School · US

Funding

PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
UNIVERSITY OF MASSACHUSETTS CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCEUL1RR031982 · NCRR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SULLIVAN, JOHN LEWIS · 2010 to 2011
$6.8M
CMV-Specific CD8+ T Cell Responses in Kidney Transplant RecipientsK08AI062752 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GIBSON, LAURA L. · 2006 to 2010
$540k
Genomic Variability of Cytomegalovirus in a Clinical SettingF32AI084437 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RENZETTE, NICHOLAS · 2009 to 2010
$93k
NCI NIH HHS R01CA152872NCRR NIH HHS UL1 RR031982NIAID NIH HHS F32 AI084437NIAID NIH HHS F32AI084437NIAID NIH HHS K08 AI062752NIAID NIH HHS K08AI062752NIDDK NIH HHS DK32520NIDDK NIH HHS P30 DK032520NIDDK NIH HHS P30DK32520
6 · The paper itself

Abstract

Research has shown that RNA virus populations are highly variable, most likely due to low fidelity replication of RNA genomes. It is generally assumed that populations of DNA viruses will be less complex and show reduced variability when compared to RNA viruses. Here, we describe the use of high throughput sequencing for a genome wide study of viral populations from urine samples of neonates with congenital human cytomegalovirus (HCMV) infections. We show that HCMV intrahost genomic variability, both at the nucleotide and amino acid level, is comparable to many RNA viruses, including HIV. Within intrahost populations, we find evidence of selective sweeps that may have resulted from immune-mediated mechanisms. Similarly, genome wide, population genetic analyses suggest that positive selection has contributed to the divergence of the HCMV species from its most recent ancestor. These data provide evidence that HCMV, a virus with a large dsDNA genome, exists as a complex mixture of genome types in humans and offer insights into the evolution of the virus.

Indexed as

Genetic VariationCytomegalovirusCytomegalovirus InfectionsGenome, ViralHigh-Throughput Nucleotide SequencingHumansInfant, NewbornInfant, Newborn, DiseasesMolecular Sequence DataSequence AlignmentSequence Analysis, DNA

Identifiers

PMID21625576
PMCPMC3098220
OpenAlexW2022624350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.