Evidence map›Paper›PMID 21625570›Full record

ArticlePLoS pathogens2011

Structural insights into viral determinants of nematode mediated Grapevine fanleaf virus transmission.

Pascale Schellenberger, Claude Sauter, Bernard Lorber, Patrick Bron, Stefano Trapani, Marc Bergdoll, Aurélie Marmonier, Corinne Schmitt-Keichinger, Olivier Lemaire, Gérard Demangeat and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
  3. Efficiency and Persistence of MoventoPlants (Basel, Switzerland) · 2021
    Article
  4. Article
  5. Article
  6. Structural basis of nanobody recognition of grapevine fanleaf virus and of virus resistance loss.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Production and Partial Purification of theIranian journal of biotechnology · 2018
    Article
  12. Article
  13. Efficient Detection of Long dsRNAFrontiers in plant science · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Pascale SchellenbergerInstitut National de la Recherche Agronomique, INRA/UDS UMR 1131, Colmar, France.
Claude Sauter
Bernard Lorber
Patrick Bron
Stefano Trapani
Marc Bergdoll
Aurélie Marmonier
Corinne Schmitt-Keichinger
Olivier Lemaire
Gérard Demangeat
Christophe Ritzenthaler
Centre National de la Recherche Scientifique · FRInstitut de Biologie Moléculaire des Plantes · FRInstitut National de la Recherche Agronomique du Niger · NECentre de Biologie Structurale · FRColmar Inra Research Centre · FRInstitut des Neurosciences Cellulaires et Intégratives · FRInstitut National de la Recherche Agronomique · MA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many animal and plant viruses rely on vectors for their transmission from host to host. Grapevine fanleaf virus (GFLV), a picorna-like virus from plants, is transmitted specifically by the ectoparasitic nematode Xiphinema index. The icosahedral capsid of GFLV, which consists of 60 identical coat protein subunits (CP), carries the determinants of this specificity. Here, we provide novel insight into GFLV transmission by nematodes through a comparative structural and functional analysis of two GFLV variants. We isolated a mutant GFLV strain (GFLV-TD) poorly transmissible by nematodes, and showed that the transmission defect is due to a glycine to aspartate mutation at position 297 (Gly297Asp) in the CP. We next determined the crystal structures of the wild-type GFLV strain F13 at 3.0 Å and of GFLV-TD at 2.7 Å resolution. The Gly297Asp mutation mapped to an exposed loop at the outer surface of the capsid and did not affect the conformation of the assembled capsid, nor of individual CP molecules. The loop is part of a positively charged pocket that includes a previously identified determinant of transmission. We propose that this pocket is a ligand-binding site with essential function in GFLV transmission by X. index. Our data suggest that perturbation of the electrostatic landscape of this pocket affects the interaction of the virion with specific receptors of the nematode's feeding apparatus, and thereby severely diminishes its transmission efficiency. These data provide a first structural insight into the interactions between a plant virus and a nematode vector.

Indexed as

NepovirusProtein Structure, QuaternaryAmino Acid SubstitutionAnimalsCapsidCapsid ProteinsMutationNematodaPlant DiseasesPlant VirusesRNA, ViralSequence AlignmentSequence Analysis, ProteinStatic ElectricityX-Ray DiffractionCapsid ProteinsRNA, Viral

Identifiers

PMID21625570
PMCPMC3098200
OpenAlexW1979671019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.