Evidence map›Paper›PMID 21625474›Full record

ArticlePloS one2011

Visual genome-wide RNAi screening to identify human host factors required for Trypanosoma cruzi infection.

Auguste Genovesio, Miriam A Giardini, Yong-Jun Kwon, Fernando de Macedo Dossin, Seo Yeon Choi, Nam Youl Kim, Hi Chul Kim, Sung Yong Jung, Sergio Schenkman, Igor C Almeida and 2 more

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Contribution of high-content imaging technologies to the development of anti-infective drugs.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2016
    Review
  11. Article
  12. Article
  13. Phenotypic MicroRNA Microarrays.Microarrays (Basel, Switzerland) · 2013
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Host gene targets for novel influenza therapies elucidated by high-throughput RNA interference screens.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2012
    Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Auguste GenovesioImage Mining Group, Institut Pasteur Korea, Seongnam-si, Gyeonggi-do, South Korea.
Miriam A Giardini
Yong-Jun Kwon
Fernando de Macedo Dossin
Seo Yeon Choi
Nam Youl Kim
Hi Chul Kim
Sung Yong Jung
Sergio Schenkman
Igor C Almeida
Neil Emans
Lucio H Freitas-Junior

Funding

TOXICOLOGY PROJECTG12RR008124 · NCRR · UNIVERSITY OF TEXAS EL PASO · PI WALSH, ELIZABETH J · 1992 to 2011
$20.8M
Molecular Composition and Function of Trypanosoma cruzi Shed VesiclesR01AI070655 · NIAID · UNIVERSITY OF TEXAS EL PASO · PI ALMEIDA, IGOR C · 2007 to 2011
$1.8M
NCRR NIH HHS 5G12RR008124-16A1NCRR NIH HHS G12 RR008124NIAID NIH HHS 1R01AI070655NIAID NIH HHS R01 AI070655NIGMS NIH HHS 2S06GM00812
6 · The paper itself

Abstract

The protozoan parasite Trypanosoma cruzi is the etiologic agent of Chagas disease, a neglected tropical infection that affects millions of people in the Americas. Current chemotherapy relies on only two drugs that have limited efficacy and considerable side effects. Therefore, the development of new and more effective drugs is of paramount importance. Although some host cellular factors that play a role in T. cruzi infection have been uncovered, the molecular requirements for intracellular parasite growth and persistence are still not well understood. To further study these host-parasite interactions and identify human host factors required for T. cruzi infection, we performed a genome-wide RNAi screen using cellular microarrays of a printed siRNA library that spanned the whole human genome. The screening was reproduced 6 times and a customized algorithm was used to select as hits those genes whose silencing visually impaired parasite infection. The 162 strongest hits were subjected to a secondary screening and subsequently validated in two different cell lines. Among the fourteen hits confirmed, we recognized some cellular membrane proteins that might function as cell receptors for parasite entry and others that may be related to calcium release triggered by parasites during cell invasion. In addition, two of the hits are related to the TGF-beta signaling pathway, whose inhibition is already known to diminish levels of T. cruzi infection. This study represents a significant step toward unveiling the key molecular requirements for host cell invasion and revealing new potential targets for antiparasitic therapy.

Indexed as

AnimalsBiomarkersCells, CulturedChagas DiseaseGene Expression ProfilingGenome, HumanHaplorhiniHigh-Throughput Screening AssaysHost-Parasite InteractionsHumansKidneyOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionRNA InterferenceRNA, MessengerRNA, Small InterferingBiomarkersRNA, MessengerRNA, Small InterferingTransforming Growth Factor beta

Identifiers

PMID21625474
PMCPMC3098829

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.