ArticleBMC proceedings2011
QTLMAS 2010: simulated dataset.
Article in BMC proceedings, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 36 citations in OpenAlex.
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- TB-DROP: deep learning-based drug resistance prediction of Mycobacterium tuberculosis utilizing whole genome mutations.BMC genomics · 2024Article
- A proximal LAVA method for genome-wide association and prediction of traits with mixed inheritance patterns.BMC bioinformatics · 2021Article
- Sparse Convolutional Neural Networks for Genome-Wide Prediction.Frontiers in genetics · 2020Article
- A Study of Genomic Prediction of 12 Important Traits in the Domesticated Yak (Animals : an open access journal from MDPI · 2019Article
- AUTALASSO: an automatic adaptive LASSO for genome-wide prediction.BMC bioinformatics · 2019Article
- On the Use of the Pearson Correlation Coefficient for Model Evaluation in Genome-Wide Prediction.Frontiers in genetics · 2019Article
- Approximate Bayesian neural networks in genomic prediction.Genetics, selection, evolution : GSE · 2018Article
- Bayesian methods for jointly estimating genomic breeding values of one continuous and one threshold trait.PloS one · 2017Article
- Genome-wide prediction using Bayesian additive regression trees.Genetics, selection, evolution : GSE · 2016Article
- Article
- Bayesian methods for estimating GEBVs of threshold traits.Heredity · 2013Article
- Evaluation of the lasso and the elastic net in genome-wide association studies.Frontiers in genetics · 2013Article
- Genomic breeding value prediction and QTL mapping of QTLMAS2010 data using Bayesian Methods.BMC proceedings · 2011Article
- Genotype imputation for the prediction of genomic breeding values in non-genotyped and low-density genotyped individuals.BMC proceedings · 2011Article
- Comparison of analyses of the QTLMAS XIV common dataset. II: QTL analysis.BMC proceedings · 2011Article
- Comparison of analyses of the QTLMAS XIV common dataset. I: genomic selection.BMC proceedings · 2011Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundObjective was to simulate the data for the QTLMAS 2010 Workshop under a model that includes major additive, epistatic and parent-of-origin effects.
resultsData were simulated for 3226 individuals in 5 generations. Genomic data for 5 chromosomes were simulated using coalescent model. In total, the data included 10,031 SNPs, 30 additive QTLs, 2 interacting QTL pairs, and 3 imprinted loci. The density was 20 SNPs/1Mb, whereas mean linkage disequilibrium between adjacent SNPs was 0.1. One quantitative and one binary trait were simulated with heritability of 0.39-0.52 and additive correlation of 0.59. The data can be used as a benchmark for comparison of QTL mapping methods and models for genomic breeding value estimation under complex genetic architecture.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.