Evidence map›Paper›PMID 21623344›Full record

ArticleThe EMBO journal2011

An RNA-protein complex links enhanced nuclear 3' processing with cytoplasmic mRNA stabilization.

Xinjun Ji, Jian Kong, Stephen A Liebhaber

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
  7. Blood · 2019
    Article
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  13. Molecular modulators of the circadian clock: lessons from flies and mice.Cellular and molecular life sciences : CMLS · 2017
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xinjun JiDepartment of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.
Jian Kong
Stephen A Liebhaber
University of Pennsylvania · US

Funding

VAV ANTISENSE ODN--A NOVEL THERAPEUTIC FOR HUMAN LEUKEMIASP01CA072765 · NCI · UNIVERSITY OF PENNSYLVANIA · PI GEWIRTZ, ALAN M · 1997 to 2007
$8.5M
Post-Transcriptional controls in Mammalian Erythroid DifferentiationR01HL065449 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 2000 to 2019
$4.1M
Alpha-Globin expression: Post transcriptional mechanismsR37HL065449 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 2004 to 2013
$3.9M
NCI NIH HHS CA72765NCI NIH HHS P01 CA072765NHLBI NIH HHS HL 65449NHLBI NIH HHS R01 HL065449NHLBI NIH HHS R37 HL065449
6 · The paper itself

Abstract

Post-transcriptional controls are critical to gene regulation. These controls are frequently based on sequence-specific binding of trans-acting proteins to cis-acting motifs on target RNAs. Prior studies have revealed that the KH-domain protein, αCP, binds to a 3' UTR C-rich motif of hα-globin mRNA and contributes to its cytoplasmic stability. Here, we report that this 3' UTR αCP complex regulates the production of mature α-globin mRNA by enhancing 3' processing of the hα-globin transcript. We go on to demonstrate that this nuclear activity reflects enhancement of both the cleavage and the polyadenylation reactions and that αCP interacts in vivo with core components of the 3' processing complex. Consistent with its nuclear processing activity, our studies reveal that αCP assembles co-transcriptionally at the hα-globin chromatin locus and that this loading is selectively enriched at the 3' terminus of the gene. The demonstrated linkage of nuclear processing with cytoplasmic stabilization via a common RNA-protein complex establishes a basis for integration of sequential controls critical to robust and sustained expression of a target mRNA.

Indexed as

3' Untranslated Regionsalpha-GlobinsBase SequenceChromatinCytoplasmDNA-Binding ProteinsHeLa CellsHeterogeneous-Nuclear RibonucleoproteinsHumansK562 CellsMacromolecular SubstancesModels, BiologicalMolecular Sequence DataProtein BindingRNA-Binding ProteinsRNA, Messenger3' Untranslated Regionsalpha-GlobinsChromatinDNA-Binding ProteinsHeterogeneous-Nuclear RibonucleoproteinsMacromolecular SubstancesPCBP1 protein, humanRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID21623344
PMCPMC3155305
OpenAlexW1862968448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.