Evidence map›Paper›PMID 21622748›Full record

ArticleJournal of bacteriology2011

The riboswitch regulates a thiamine pyrophosphate ABC transporter of the oral spirochete Treponema denticola.

Jiang Bian, Hongwu Shen, Youbin Tu, Aiming Yu, Chunhao Li

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
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  5. Article
  6. Riboswitches as Drug Targets for Antibiotics.Antibiotics (Basel, Switzerland) · 2021
    Review
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  8. Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jiang BianDepartment of Oral Biology, The State University of New York at Buffalo, Buffalo, New York 14214, USA.
Hongwu Shen
Youbin Tu
Aiming Yu
Chunhao Li
University at Buffalo, State University of New York · USSoochow University · CN

Funding

Understanding Unique Aspects of Motility and Chemotaxis in Borrelia burgdorferiR01AI078958 · NIAID · VIRGINIA COMMONWEALTH UNIVERSITY · PI Chunhao Chris Li · 2008 to 2026
$5.7M
Developing Inhibitors of LuxS-dependent Quorum Sensing Systems in Oral BacteriaR01DE019667 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LI, CHUNHAO CHRIS · 2010 to 2013
$1.4M
Role of Zonula Occludens Toxin in the Pathogenesis of Treponema denticolaR21DE018829 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LI, CHUNHAO CHRIS · 2008 to 2009
$427k
NIAID NIH HHS AI078958NIAID NIH HHS R01 AI078958NIDCR NIH HHS DE019667NIDCR NIH HHS R01 DE019667NIDCR NIH HHS R21 DE018829
6 · The paper itself

Abstract

Thiamine pyrophosphate (TPP), a biologically active form of thiamine (vitamin B₁), is an essential cofactor in all living systems. Microorganisms either synthesize TPP via de novo biosynthesis pathways or uptake exogenous thiamine from the environment via specific transporters. The oral spirochete Treponema denticola is an important pathogen that is associated with human periodontal diseases. It lacks a de novo TPP biosynthesis pathway and needs exogenous TPP for growth, suggesting that it may obtain exogenous TPP via a thiamine transporter. In this study, we identified a gene cluster that encodes a TPP ABC transporter which consists of a TPP-binding protein (TDE0143), a transmembrane permease (TDE0144), and a cytosolic ATPase (TDE0145). Transcriptional and translational analyses showed that the genes encoding these three proteins are cotranscribed and form an operon (tbpABC(Td)) that is initiated by a σ⁷⁰-like promoter. The expression level of this operon is negatively regulated by exogenous TPP and is mediated by a TPP-sensing riboswitch (Td(thi-)(box)). Genetic and biochemical studies revealed that the TDE0143 deletion mutant (T. denticola ΔtbpA) had a decreased ability to transport exogenous TPP, and the mutant failed to grow when exogenous TPP was insufficient. These results taken together indicate that the tbpABC(Td) operon encodes an ABC transporter that is required for the uptake of exogenous TPP and that the expression of this operon is regulated by a TPP-binding riboswitch via a feedback inhibition mechanism.

Indexed as

Gene Expression Regulation, BacterialRiboswitchATP-Binding Cassette TransportersBacterial ProteinsBase SequenceHumansModels, MolecularMolecular Sequence DataNucleic Acid ConformationPeriodontal DiseasesRNA, BacterialThiamine PyrophosphateTreponema denticolaTreponemal InfectionsATP-Binding Cassette TransportersBacterial ProteinsRiboswitchRNA, BacterialThiamine Pyrophosphate

Identifiers

PMID21622748
PMCPMC3147507
OpenAlexW2145194492

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.