ArticleJournal of bacteriology2011
Genomes of three methylotrophs from a single niche reveal the genetic and metabolic divergence of the methylophilaceae.
Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
30 citing papers in PubMed, 63 citations in OpenAlex.
- Succession of Particle-Attached and Free-Living Microbial Communities in Response to the Degradation of Algal Organic Matter in Lake Taihu, China.Environmental microbiology reports · 2025Article
- Beyond the pink: uncovering the secrets of pink pigmented facultative methylotrophs.Archives of microbiology · 2025Review
- Emerging role of rare earth elements in biomolecular functions.The ISME journal · 2025Review
- UMGAP: the Unipept MetaGenomics Analysis Pipeline.BMC genomics · 2022Article
- Depth wide distribution and metabolic potential of chemolithoautotrophic microorganisms reactivated from deep continental granitic crust underneath the Deccan Traps at Koyna, India.Frontiers in microbiology · 2022Article
- Analysis of Different Size Fractions Provides a More Complete Perspective of Viral Diversity in a Freshwater Embayment.Applied and environmental microbiology · 2021Article
- Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake.Frontiers in microbiology · 2020Article
- Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae.The ISME journal · 2019Article
- Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps.Extremophiles : life under extreme conditions · 2019Article
- Evidence for photolytic and microbial degradation processes in the dissipation of leptospermone, a natural β-triketone herbicide.Environmental science and pollution research international · 2018Article
- Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties.Frontiers in microbiology · 2018Article
- Bacterial plasmid-mediated quinolone resistance genes in aquatic environments in China.Scientific reports · 2017Article
- Natural Selection in Synthetic Communities Highlights the Roles ofFrontiers in microbiology · 2017Article
- Article
- Eelgrass Leaf Surface Microbiomes Are Locally Variable and Highly Correlated with Epibiotic Eukaryotes.Frontiers in microbiology · 2017Article
- Self-resistance in Streptomyces, with Special Reference to β-Lactam Antibiotics.Molecules (Basel, Switzerland) · 2016Review
- A Synthetic Ecology Perspective: How Well Does Behavior of Model Organisms in the Laboratory Predict Microbial Activities in Natural Habitats?Frontiers in microbiology · 2016Article
- Cerium regulates expression of alternative methanol dehydrogenases in Methylosinus trichosporium OB3b.Applied and environmental microbiology · 2015Article
- SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment.The ISME journal · 2015Article
- The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign.The ISME journal · 2015Article
Corrections and comments
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Authors and funding
14 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The genomes of three representatives of the family Methylophilaceae, Methylotenera mobilis JLW8, Methylotenera versatilis 301, and Methylovorus glucosetrophus SIP3-4, all isolated from a single study site, Lake Washington in Seattle, WA, were completely sequenced. These were compared to each other and to the previously published genomes of Methylobacillus flagellatus KT and an unclassified Methylophilales strain, HTCC2181. Comparative analysis revealed that the core genome of Methylophilaceae may be as small as approximately 600 genes, while the pangenome may be as large as approximately 6,000 genes. Significant divergence between the genomes in terms of both gene content and gene and protein conservation was uncovered, including the varied presence of certain genes involved in methylotrophy. Overall, our data demonstrate that metabolic potentials can vary significantly between different species of Methylophilaceae, including organisms inhabiting the very same environment. These data suggest that genetic divergence among the members of this family may be responsible for their specialized and nonredundant functions in C₁ cycling, which in turn suggests means for their successful coexistence in their specific ecological niches.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.