ArticleNucleic acids research2011
CoMet--a web server for comparative functional profiling of metagenomes.
Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Metagenomic profiling of gut microbime: associating their role with the advancement of diabetic nephropathy.Antonie van Leeuwenhoek · 2025Review
- Profiling of Pharmaceutical Sludge Microbiome, Resistome and Secondary Metabolites Using Metagenomics.Indian journal of microbiology · 2025Article
- A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery.Developmental biology · 2020Article
- Decoding microbial community intelligence through metagenomics for efficient wastewater treatment.Functional & integrative genomics · 2019Article
- Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes.Cell reports · 2019Article
- Recentrifuge: Robust comparative analysis and contamination removal for metagenomics.PLoS computational biology · 2019Article
- A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.Microbiome · 2018Article
- A sensitive short read homology search tool for paired-end read sequencing data.BMC bioinformatics · 2017Article
- MOCAT2: a metagenomic assembly, annotation and profiling framework.Bioinformatics (Oxford, England) · 2016Article
- Review
- Metagenomics, Metatranscriptomics, and Metabolomics Approaches for Microbiome Analysis.Evolutionary bioinformatics online · 2016Review
- Web Resources for Metagenomics Studies.Genomics, proteomics & bioinformatics · 2015Review
- Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences.Microbial ecology · 2015Article
- Metagenomic surveys of gut microbiota.Genomics, proteomics & bioinformatics · 2015Review
- Article
- Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries.Microbiome · 2015Article
- Partial Least Squares Regression Can Aid in Detecting Differential Abundance of Multiple Features in Sets of Metagenomic Samples.Frontiers in genetics · 2015Article
- A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.PLoS computational biology · 2014Article
- Exploring neighborhoods in the metagenome universe.International journal of molecular sciences · 2014Article
- Land use type significantly affects microbial gene transcription in soil.Microbial ecology · 2014Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Analyzing the functional potential of newly sequenced genomes and metagenomes has become a common task in biomedical and biological research. With the advent of high-throughput sequencing technologies comparative metagenomics opens the way to elucidate the genetically determined similarities and differences of complex microbial communities. We developed the web server 'CoMet' (http://comet.gobics.de), which provides an easy-to-use comparative metagenomics platform that is well-suitable for the analysis of large collections of metagenomic short read data. CoMet combines the ORF finding and subsequent assignment of protein sequences to Pfam domain families with a comparative statistical analysis. Besides comprehensive tabular data files, the CoMet server also provides visually interpretable output in terms of hierarchical clustering and multi-dimensional scaling plots and thus allows a quick overview of a given set of metagenomic samples.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.