Evidence map›Paper›PMID 21621256›Full record

ArticleThe Journal of allergy and clinical immunology2011

Cosmopolitan and ethnic-specific replication of genetic risk factors for asthma in 2 Latino populations.

Joshua M Galanter, Dara Torgerson, Christopher R Gignoux, Saunak Sen, Lindsey A Roth, Marc Via, Melinda C Aldrich, Celeste Eng, Scott Huntsman, Jose Rodriguez-Santana and 4 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 4 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 4 syntheses or guidelines pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Frontiers in genetics · 2018
    Article
  7. Article
  8. Asthma in Puerto Ricans: Lessons from a high-risk population.The Journal of allergy and clinical immunology · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Asthma in Hispanics. An 8-year update.American journal of respiratory and critical care medicine · 2014
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Joshua M GalanterDepartment of Medicine, University of California, San Francisco, CA 94143-2911, USA. joshua.galanter@ucsf.edu
Dara Torgerson
Christopher R Gignoux
Saunak Sen
Lindsey A Roth
Marc Via
Melinda C Aldrich
Celeste Eng
Scott Huntsman
Jose Rodriguez-Santana
William Rodriguez-Cintrón
Rocio Chapela
Jean G Ford
Esteban G Burchard
University of California, San Francisco · USCentro de Neumologia Pediatrica · PRInstituto Nacional de Enfermedades Respiratorias · MXJohns Hopkins University · USUniversitat de Barcelona · ESUniversity of Puerto Rico, Medical Sciences Campus · PRVanderbilt University Medical Center · US

Funding

Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle · 2008 to 2026
$41.1M
CLINICAL, PHARMACOLOGY, DRUG ACTION &PHARMACOKINETICST32GM007546 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Radojka Savic · 1985 to 2026
$8.9M
The EVE Asthma Genetics Consortium: Building Upon GWASRC2HL101651 · NHLBI · UNIVERSITY OF CHICAGO · PI NICOLAE, DAN LIVIU, OBER, CAROLE · 2009 to 2010
$7.4M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Whole Genome Analyses for Asthma in Latino PopulationsR01HL088133 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$3.8M
Case-control Association Studies and Genetic ConfoundingR01HL078885 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2005 to 2009
$1.9M
NHLBI NIH HHS 1RC2 HL101651NHLBI NIH HHS HL078885NHLBI NIH HHS HL088133NHLBI NIH HHS R01 HL078885NHLBI NIH HHS R01 HL088133NHLBI NIH HHS RC2 HL101651NIAID NIH HHS U19 AI077439NIEHS NIH HHS ES015794NIEHS NIH HHS R01 ES015794NIGMS NIH HHS 2T32GM007546NIGMS NIH HHS T32 GM007546
6 · The paper itself

Abstract

backgroundAlthough Mexicans and Puerto Ricans are jointly classified as "Hispanic/Latino," there are significant differences in asthma prevalence, severity, and mortality between the 2 groups. We sought to examine the possibility that population-specific genetic risks contribute to this disparity.

objectivesMore than 100 candidate genes have been associated with asthma and replicated in an independent population, and 7 genome-wide association studies in asthma have been performed. We compared the pattern of replication of these associations in Puerto Ricans and Mexicans.

methodsWe genotyped Mexican and Puerto Rican trios using an Affymetrix 6.0 GeneChip and used a family-based analysis to test for genetic associations in 124 genes previously associated with asthma.

resultsWe identified 32 single nucleotide polymorphisms (SNPs) in 17 genes associated with asthma in at least 1 of the 2 populations. Twenty-two of these SNPs in 11 genes were significantly associated with asthma in the combined population and showed no significant heterogeneity of association, whereas 5 SNPs were associated in only 1 population and showed statistically significant heterogeneity. In a gene-based approach 2 additional genes were associated with asthma in the combined population, and 3 additional genes displayed ethnic-specific associations with heterogeneity.

conclusionsOur results show that only a minority of genetic association studies replicate in our population of Mexican and Puerto Rican asthmatic subjects. Among SNPs that were successfully replicated, most showed no significant heterogeneity across populations. However, we identified several population-specific genetic associations.

Indexed as

Genetic Predisposition to DiseaseAdolescentAdultAsthmaChildFemaleHispanic or LatinoHumansMaleMexican AmericansMexicoOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotidePuerto RicoRisk FactorsYoung Adult

Identifiers

PMID21621256
PMCPMC3129381
OpenAlexW1966559616

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.