Evidence map›Paper›PMID 21617750›Full record

ArticleMolecular vision2011

XRCC1 and XPD DNA repair gene polymorphisms: a potential risk factor for glaucoma in the Pakistani population.

Sajeela Yousaf, Muhammad Imran Khan, Shazia Micheal, Farah Akhtar, Syeda Hafiza Benish Ali, Moeen Riaz, Mahmood Ali, Pramila Lall, Nadia Khalida Waheed, Anneke I den Hollander and 2 more

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Variation in DNA Base Excision Repair Genes in Fuchs Endothelial Corneal Dystrophy.Medical science monitor : international medical journal of experimental and clinical research · 2015
    Article
  5. Polymorphism of the DNA base excision repair genes in keratoconus.International journal of molecular sciences · 2014
    Article
  6. Article
  7. Genetics of primary open angle glaucoma.Japanese journal of ophthalmology · 2014
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Sajeela YousafDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
Muhammad Imran Khan
Shazia Micheal
Farah Akhtar
Syeda Hafiza Benish Ali
Moeen Riaz
Mahmood Ali
Pramila Lall
Nadia Khalida Waheed
Anneke I den Hollander
Asifa Ahmed
Raheel Qamar
COMSATS University Islamabad · PKDar Al-Shifa Hospital · PSRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe present study was designed to determine the association of polymorphisms of the DNA repair genes X-ray cross-complementing group 1 (XRCC1) (c.1316G>A [rs25487]) and xeroderma pigmentosum complementation group D (XPD) (c.2298A>C [rs13181]) with primary open-angle glaucoma (POAG) and primary closed-angle glaucoma (PCAG).

methodsIn this prospective case-control study, polymerase chain reaction-restriction fragment length polymorphism analysis was used to study the association of XRCC1 and XPD with 160 POAG patients, 163 PCAG patients, and 193 unaffected controls.

resultsXRCC1 rs25487 was found to be significantly associated specifically with male POAG patients (χ(2) = 13.2 [p = 0.001]), only for the dominant model (odds ratio [OR] = 2.65 [95% confidence interval [CI] = 1.44-4.85], p < 0.005). In addition XPD rs13181 was also found to be associated with male POAG patients (χ(2) = 12.1 [p < 0.005]), for both dominant (OR = 2.44 [95% CI = 1.33-4.47], p < 0.005) as well as recessive model (OR = 3.62 [95% CI = 1.45-9.01], p < 0.01). Combined genotypes of both the genes revealed that the heterozygote AC/GA was significantly associated with the male POAG patients (z = 3.00 [p < 0.001]). The AA/GG genotype was present at a higher frequency in the male controls and the AA/GA in the female controls and could thus have a protective role in males and females, respectively.

conclusionsWe postulate that defects in the DNA repair genes XRCC1 and XPD may possibly be associated with the progression of POAG in male patients of Pakistani origin.

Indexed as

Asian PeopleGenetic Association StudiesAdultBase SequenceCase-Control StudiesDNA-Binding ProteinsDNA RepairFemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeGlaucoma, Angle-ClosureGlaucoma, Open-AngleHumansMaleMolecular Sequence DataDNA-Binding ProteinsERCC2 protein, humanXeroderma Pigmentosum Group D ProteinX-ray Repair Cross Complementing Protein 1XRCC1 protein, human

Identifiers

PMID21617750
PMCPMC3102023
OpenAlexW2133145480

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.