Evidence map›Paper›PMID 21614020›Full record

ArticleGenes and immunity2011

The rs4774 CIITA missense variant is associated with risk of systemic lupus erythematosus.

P G Bronson, B A Goldstein, P P Ramsay, K B Beckman, J A Noble, J A Lane, M F Seldin, J A Kelly, J B Harley, K L Moser and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Genes and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. NOD-like receptors in autoimmune diseases.Acta pharmacologica Sinica · 2021
    Review
  4. Association between variant alleles of major histocompatibility complex class II regulatory genes and nasopharyngeal carcinoma susceptibility.European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

P G BronsonDivision of Epidemiology, Genetic Epidemiology and Genomics Laboratory, School of Public Health, University of California, Berkeley, CA 94720-7356, USA.
B A Goldstein
P P Ramsay
K B Beckman
J A Noble
J A Lane
M F Seldin
J A Kelly
J B Harley
K L Moser
P M Gaffney
T W Behrens
L A Criswell
L F Barcellos
University of California, Berkeley · USOklahoma Medical Research Foundation · USCincinnati Children's Hospital Medical Center · USUniversity of California, Davis · USUniversity of California, San Francisco · USUniversity of Minnesota · US

Funding

ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
The Interplay of Sociodemographic and Genetic Factors in SLE Health DisparitiesP60AR053308 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KATZ, PATRICIA P · 2006 to 2016
$11.8M
SequencingP01AI083194 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2009 to 2013
$9.6M
SNP Confirmation and High Throughput Genotyping CoreP30AR053483 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN · 2007 to 2017
$6.7M
GENE MAPPING IN WOMEN WITH SYSTEMIC LUPUS ERYTHEMATOSUSR01AR043274 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SIVILS, KATHY L. · 1996 to 2010
$6.5M
GENETIC ASSOCIATION WITH LUPUS IN AMERICAN BLACKSR01AR042460 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 1993 to 2009
$5.1M
Genetic Linkage in LupusR37AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 2005 to 2014
$4.2M
LUPUS FAMILY REGISTRY AND REPOSITORYN01AR62277 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN · 2007 to 2009
$4.0M
Comprehensive Candidate Pathway Analysis in SLER01AI063274 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GAFFNEY, PATRICK M · 2005 to 2009
$3.1M
Novel strategies for defining the role of HLA in SLER01AR052300 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 2005 to 2009
$2.8M
NCRR NIH HHS 5-M01-RR-00079NCRR NIH HHS M01 RR000079NCRR NIH HHS P20 RR020143NCRR NIH HHS P20-RR020143NIAID NIH HHS F31 AI075609NIAID NIH HHS F31-AI075609NIAID NIH HHS P01 AI083194NIAID NIH HHS R01 AI063274NIAID NIH HHS R37 AI024717NIAID NIH HHS R37 AI24717NIAMS NIH HHS K24 AR002175NIAMS NIH HHS K24-AR02175NIAMS NIH HHS N01 AR062277NIAMS NIH HHS N01 AR62277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P60 AR053308NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01 AR043274NIAMS NIH HHS R01 AR043274-14NIAMS NIH HHS R01 AR044804NIAMS NIH HHS R01 AR052300NIAMS NIH HHS R01-AR052300NIAMS NIH HHS R01 AR42460NIAMS NIH HHS R01-AR44804PHS HHS 5R01 A1063274-06Wellcome TrustWellcome Trust 076113
6 · The paper itself

Abstract

The major histocompatibility complex (MHC) class II transactivator gene (CIITA) encodes an important transcription factor required for human leukocyte antigens (HLA) class II MHC-restricted antigen presentation. MHC genes, including the HLA class II DRB1*03:01 allele, are strongly associated with systemic lupus erythematosus (SLE). Recently the rs4774 CIITA missense variant (+1632G/C) was reported to be associated with susceptibility to multiple sclerosis. In the current study, we investigated CIITA, DRB1*03:01 and risk of SLE using a multi-stage analysis. In stage 1, 9 CIITA variants were tested in 658 cases and 1363 controls (N=2021). In stage 2, rs4774 was tested in 684 cases and 2938 controls (N=3622). We also performed a meta-analysis of the pooled 1342 cases and 4301 controls (N=5643). In stage 1, rs4774(*)C was associated with SLE (odds ratio (OR)=1.24, 95% confidence interval (95% CI)=1.07-1.44, P=4.2 × 10(-3)). Similar results were observed in stage 2 (OR=1.16, 95% CI=1.02-1.33, P=8.5 × 10(-3)) and the meta-analysis of the combined data set (OR=1.20, 95% CI=1.09-1.33, P(meta)=2.5 × 10(-4)). In all three analyses, the strongest evidence for association between rs4774(*)C and SLE was present in individuals who carried at least one copy of DRB1*03:01 (P(meta)=1.9 × 10(-3)). Results support a role for CIITA in SLE, which appears to be stronger in the presence of DRB1*03:01.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAdultAgedAged, 80 and overAllelesFemaleHLA-DRB1 ChainsHumansLupus Erythematosus, SystemicMaleMiddle AgedNuclear ProteinsPolymorphism, Single NucleotideRiskTrans-ActivatorsHLA-DRB1 ChainsMHC class II transactivator proteinNuclear ProteinsTrans-Activators

Identifiers

PMID21614020
PMCPMC3387803
OpenAlexW2081078871

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.