Evidence map›Paper›PMID 21613981›Full record

ArticleMolecular systems biology2011

Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics.

Zhike Zi, Zipei Feng, Douglas A Chapnick, Markus Dahl, Difan Deng, Edda Klipp, Aristidis Moustakas, Xuedong Liu

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 104 citations in OpenAlex.

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  11. State- and stimulus-specific dynamics of SMAD signaling determine fate decisions in individual cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  17. Article
  18. TGF-β Signaling and Resistance to Cancer Therapy.Frontiers in cell and developmental biology · 2021
    Review
  19. Article
  20. Profiling Cell Signaling Networks at Single-cell Resolution.Molecular & cellular proteomics : MCP · 2020
    Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Zhike ZiBIOSS Centre for Biological Signalling Studies and Center for Biological Systems Analysis (ZBSA), University of Freiburg, Freiburg, Germany. zhike.zi@bioss.uni-freiburg.de
Zipei Feng
Douglas A Chapnick
Markus Dahl
Difan Deng
Edda Klipp
Aristidis Moustakas
Xuedong Liu
University of Colorado Boulder · USHumboldt-Universität zu Berlin · DELudwig Cancer Research · SEUniversity of Freiburg · DEUppsala University · SE

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Mechanisms of p27Kipl Proteolysis in Cancer CellsR01CA107098 · NCI · UNIVERSITY OF COLORADO AT BOULDER · PI LIU, XUEDONG · 2004 to 2012
$2.7M
Quantitative Analysis of TGF-b/Smad Signaling DynamicsR01GM083172 · NIGMS · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2008 to 2011
$1.0M
NCI NIH HHS R01 CA107098NCI NIH HHS R01CA107098NIGMS NIH HHS R01 GM083172NIGMS NIH HHS R01GM083172NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32GM08759NIGMS NIH HHS T32 GM142607
6 · The paper itself

Abstract

Mammalian cells can decode the concentration of extracellular transforming growth factor-β (TGF-β) and transduce this cue into appropriate cell fate decisions. How variable TGF-β ligand doses quantitatively control intracellular signaling dynamics and how continuous ligand doses are translated into discontinuous cellular fate decisions remain poorly understood. Using a combined experimental and mathematical modeling approach, we discovered that cells respond differently to continuous and pulsating TGF-β stimulation. The TGF-β pathway elicits a transient signaling response to a single pulse of TGF-β stimulation, whereas it is capable of integrating repeated pulses of ligand stimulation at short time interval, resulting in sustained phospho-Smad2 and transcriptional responses. Additionally, the TGF-β pathway displays different sensitivities to ligand doses at different time scales. While ligand-induced short-term Smad2 phosphorylation is graded, long-term Smad2 phosphorylation is switch-like to a small change in TGF-β levels. Correspondingly, the short-term Smad7 gene expression is graded, while long-term PAI-1 gene expression is switch-like, as is the long-term growth inhibitory response. Our results suggest that long-term switch-like signaling responses in the TGF-β pathway might be critical for cell fate determination.

Indexed as

Signal TransductionCell DifferentiationCell LineCell ProliferationGene ExpressionHumansKeratinocytesMathematical ComputingModels, BiologicalPhosphorylationPlasminogen Activator Inhibitor 1Smad2 ProteinSmad7 ProteinSystems BiologyTransfectionTransforming Growth Factor betaPlasminogen Activator Inhibitor 1Smad2 ProteinSMAD2 protein, humanSmad7 ProteinSMAD7 protein, humanTransforming Growth Factor beta

Identifiers

PMID21613981
PMCPMC3130555
OpenAlexW2165527951

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.