Evidence map›Paper›PMID 21613532›Full record

ArticleRNA (New York, N.Y.)2011

The Tpr protein regulates export of mRNAs with retained introns that traffic through the Nxf1 pathway.

John H Coyle, Yeou-Cherng Bor, David Rekosh, Marie-Louise Hammarskjold

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Unraveling docking and initiation of mRNA export through the nuclear pore complex.BioEssays : news and reviews in molecular, cellular and developmental biology · 2022
    Article
  10. Review
  11. Article
  12. Review
  13. Distinct roles of nuclear basket proteins in directing the passage of mRNA through the nuclear pore.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Review
  15. Article
  16. HIV Rev-isited.Open biology · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

John H CoyleMyles H. Thaler Center for AIDS and Human Retrovirus Research and Department of Microbiology, University of Virginia, Charlottesville, Virginia 22908, USA.
Yeou-Cherng Bor
David Rekosh
Marie-Louise Hammarskjold

Funding

Sam 68 and the Function of Mason Pfizer Monkey Virus CTER01CA097095 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAMMARSKJOLD, MARIE-LOUISE · 2003 to 2007
$1.5M
HIV Rev FunctionR01AI054335 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAMMARSKJOLD, MARIE-LOUISE · 2003 to 2007
$1.5M
NXF Proteins, Cofactors and TargetsR01GM087651 · NIGMS · UNIVERSITY OF VIRGINIA · PI HAMMARSKJOLD, MARIE-LOUISE · 2009 to 2012
$1.2M
NCI NIH HHS CA097095NCI NIH HHS R01 CA097095NIAID NIH HHS AI054335NIAID NIH HHS R01 AI054335NIGMS NIH HHS GM087651NIGMS NIH HHS R01 GM087651
6 · The paper itself

Abstract

Post-transcriptional regulation of mRNA includes restriction mechanisms to prevent export and expression of mRNAs that are incompletely spliced. Here we present evidence that the mammalian protein Tpr is involved in this restriction. To study the role of Tpr in export of mRNA with retained introns, we used reporters in which the mRNA was exported either via the Nxf1/Nxt1 pathway using a CTE or via the Crm1 pathway using Rev/RRE. Our data show that even modest knockdown of Tpr using RNAi leads to a significant increase in export and translation from the mRNA containing the CTE. In contrast, Tpr perturbation has no effect on export of mRNA containing the RRE, either in the absence or presence of Rev. Also, no effects were observed on export of a completely spliced mRNA. Taken together, our results indicate that Tpr plays an important role in quality control of mRNA trafficked on the Nxf1 pathway.

Indexed as

IntronsActive Transport, Cell NucleusCell NucleusCells, CulturedGene ExpressionGene Knockdown TechniquesHIV Core Protein p24HumansNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsProto-Oncogene Proteinsrev Gene Products, Human Immunodeficiency VirusRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small InterferingHIV Core Protein p24Nuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsNXF1 protein, humanProto-Oncogene Proteinsrev Gene Products, Human Immunodeficiency VirusRNA-Binding ProteinsRNA, MessengerRNA PrecursorsRNA, Small InterferingTPR protein, human

Identifiers

PMID21613532
PMCPMC3138570

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.