Evidence map›Paper›PMID 21611156›Full record

ArticlePloS one2011

Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle.

Barbara Meissner, Teresa Rogalski, Ryan Viveiros, Adam Warner, Lorena Plastino, Adam Lorch, Laure Granger, Laurent Segalat, Donald G Moerman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.0field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
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  7. HLH-1 Modulates Muscle Proteostasis DuringFrontiers in cell and developmental biology · 2022
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  11. Metformin rescues Parkinson's disease phenotypes caused by hyperactive mitochondria.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Tensin regulates pharyngeal pumping in Caenorhabditis elegans.Biochemical and biophysical research communications · 2020
    Article
  14. Article
  15. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Biochemistry, function, and deficiency of vitamin B12 in Caenorhabditis elegans.Experimental biology and medicine (Maywood, N.J.) · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Barbara MeissnerDepartment of Zoology, University of British Columbia, Vancouver, British Columbia, Canada.
Teresa Rogalski
Ryan Viveiros
Adam Warner
Lorena Plastino
Adam Lorch
Laure Granger
Laurent Segalat
Donald G Moerman
University of British Columbia · CACentre National de la Recherche Scientifique · FRCanada's Michael Smith Genome Sciences Centre · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Determining the sub-cellular localization of a protein within a cell is often an essential step towards understanding its function. In Caenorhabditis elegans, the relatively large size of the body wall muscle cells and the exquisite organization of their sarcomeres offer an opportunity to identify the precise position of proteins within cell substructures. Our goal in this study is to generate a comprehensive "localizome" for C. elegans body wall muscle by GFP-tagging proteins expressed in muscle and determining their location within the cell. For this project, we focused on proteins that we know are expressed in muscle and are orthologs or at least homologs of human proteins. To date we have analyzed the expression of about 227 GFP-tagged proteins that show localized expression in the body wall muscle of this nematode (e.g. dense bodies, M-lines, myofilaments, mitochondria, cell membrane, nucleus or nucleolus). For most proteins analyzed in this study no prior data on sub-cellular localization was available. In addition to discrete sub-cellular localization we observe overlapping patterns of localization including the presence of a protein in the dense body and the nucleus, or the dense body and the M-lines. In total we discern more than 14 sub-cellular localization patterns within nematode body wall muscle. The localization of this large set of proteins within a muscle cell will serve as an invaluable resource in our investigation of muscle sarcomere assembly and function.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCloning, MolecularGenomeGreen Fluorescent ProteinsHumansMitochondrial ProteinsMusclesOpen Reading FramesPhenotypeProtein TransportRecombinant Fusion ProteinsRNA InterferenceSubcellular FractionsCaenorhabditis elegans ProteinsGreen Fluorescent ProteinsMitochondrial ProteinsRecombinant Fusion Proteins

Identifiers

PMID21611156
PMCPMC3096668
OpenAlexW2000304259

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.