Evidence map›Paper›PMID 21610108›Full record

ArticleCancer research2011

A multistage association study identifies a breast cancer genetic locus at NCOA7.

Kathryn S P Higginbotham, Joan P Breyer, Kevin M Bradley, Peggy A Schuyler, W Dale Plummer, Marcia E Freudenthal, Amy Trentham-Dietz, Polly A Newcomb, Melinda E Sanders, David L Page and 4 more

Abstract read
In one paragraph

Article in Cancer research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Exome sequencing in 51 early onset non-familial CRC cases.Molecular genetics & genomic medicine · 2019
    Article
  8. Article
  9. Article
  10. Secondary use of clinical data: the Vanderbilt approach.Journal of biomedical informatics · 2014
    Article
  11. Review
  12. A multistage genetic association study identifies breast cancer risk loci at 10q25 and 16q24.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Kathryn S P HigginbothamDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Joan P Breyer
Kevin M Bradley
Peggy A Schuyler
W Dale Plummer
Marcia E Freudenthal
Amy Trentham-Dietz
Polly A Newcomb
Melinda E Sanders
David L Page
Fritz F Parl
Kathleen M Egan
William D Dupont
Jeffrey R Smith
University of Wisconsin–Madison · USCancer Research Center · USFred Hutch Cancer Center · USVanderbilt University · USVA Tennessee Valley Healthcare System · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
EPIDEMIOLOGY OF MOLECULAR RISK FACTORS FOR BREAST CANCERR01CA050468 · NCI · VANDERBILT UNIVERSITY · PI DUPONT, WILLIAM D · 1990 to 2011
$5.9M
The Vanderbilt Institute for Clinical and Translational Research (VICTR) KL2KL2RR024977 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$3.0M
PHYSICAL ACTIVITY, LIFESTYLE AND OVARIAN CANCER RISKR01CA047147 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI NEWCOMB, POLLY A · 1988 to 2007
$2.6M
Gene Interactions, Estrogen, and Risk of Breast CancerR01CA105197 · NCI · VANDERBILT UNIVERSITY · PI EGAN, KATHLEEN M · 2004 to 2006
$1.6M
The Vanderbilt Institute for Clinical and Translational Research (VICTR) TL1TL1RR024978 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$1.3M
HORMONES, LIFESTYLE AND BREAST CANCERR01CA047305 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI EGAN, KATHLEEN · 1988 to 1999
–
HORMONES, LIFESTYLE, AND BREAST CANCERR01CA069664 · NCI · DARTMOUTH COLLEGE · PI TITUS-ERNSTOFF, LINDA · 1996 to 1999
–
NCI NIH HHS CA050468NCI NIH HHS CA068485NCI NIH HHS CA098131NCI NIH HHS CA105197NCI NIH HHS CA47147NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA098131NCI NIH HHS R01 CA047147NCI NIH HHS R01 CA047305NCI NIH HHS R01 CA050468NCI NIH HHS R01 CA069664NCI NIH HHS R01 CA105197NCRR NIH HHS 1UL 1RR024975NCRR NIH HHS KL2 RR024977NCRR NIH HHS TL1 RR024978NCRR NIH HHS UL1 RR024975
6 · The paper itself

Abstract

Estrogen metabolism and growth factor signaling pathway genes play key roles in breast cancer development. We evaluated associations between breast cancer and tagging single-nucleotide polymorphisms (SNP) of 107 candidate genes of these pathways using single allele- and haplotype-based tests. We first sought concordance of associations between two study populations: the Nashville Breast Cohort (NBC; 510 cases, 988 controls), and the Cancer Genetic Markers of Susceptibility (CGEMS) breast cancer study (1,145 cases, 1,142 controls). Findings across the two study populations were concordant at tagging SNPs of six genes, and at previously published SNPs of FGFR2. We sought further replication of results for EGFR, NCOA7, and FGFR2 in the independent Collaborative Breast Cancer Study (CBCS; 1,552 cases, 1,185 controls). Associations at NCOA7 and FGFR2 replicated across all three studies. The association at NCOA7 on 6q22.32, detected by a haplotype spanning the initial protein-coding exon (5'-rs9375411, rs11967627, rs549438, rs529858, rs490361, rs17708107-3'), has not been previously reported. The haplotype had a significant inverse association with breast cancer in each study [OR(Het): 0.69 (NBC), 0.76 (CGEMS), 0.79 (CBCS)], and a meta-analysis OR(Het) of 0.75 (95% CI, 0.65-0.87, P = 1.4 × 10(-4)) in the combined study populations. The haplotype frequency was 0.07 among cases, and 0.09 among controls; homozygotes were infrequent and each OR(Hom) was not significant. NCOA7 encodes a nuclear receptor coactivator that interacts with estrogen receptor α to modulate its activity. These observations provide consistent evidence that genetic variants at the NCOA7 locus may confer a reduced risk of breast cancer.

Indexed as

AdolescentAdultAgedBreast NeoplasmsCase-Control StudiesFemaleGene ExpressionGenetic LociGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHumansLongitudinal StudiesMiddle AgedNuclear Receptor CoactivatorsPolymorphism, Single NucleotideNCOA7 protein, humanNuclear Receptor Coactivators

Identifiers

PMID21610108
PMCPMC3137260
OpenAlexW2117916151

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.