Evidence map›Paper›PMID 21608104›Full record

ArticleBirth defects research. Part A, Clinical and molecular teratology2011

De novo deletion of chromosome 20q13.33 in a patient with tracheo-esophageal fistula, cardiac defects and genitourinary anomalies implicates GTPBP5 as a candidate gene.

Benjamin D Solomon, Daniel E Pineda-Alvarez, Donald W Hadley, Amelia A Keaton, Nneamaka B Agochukwu, Manu S Raam, Hannah E Carlson-Donohoe, Aparna Kamat, Settara C Chandrasekharappa

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Birth defects research. Part A, Clinical and molecular teratology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Human Mitoribosome Biogenesis and Its Emerging Links to Disease.International journal of molecular sciences · 2021
    Review
  8. Review
  9. The Diseased Mitoribosome.FEBS letters · 2021
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Clinical geneticists' views of VACTERL/VATER association.American journal of medical genetics. Part A · 2012
    Review
  18. Familial occurrence of the VATER/VACTERL association.Pediatric surgery international · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Benjamin D SolomonMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA. solomonb@mail.nih.gov
Daniel E Pineda-Alvarez
Donald W Hadley
Amelia A Keaton
Nneamaka B Agochukwu
Manu S Raam
Hannah E Carlson-Donohoe
Aparna Kamat
Settara C Chandrasekharappa
National Institutes of Health · US

Funding

NHGRI/DIR Genomics CoreZICHG200346 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CHANDRASEKHARAPPA, SETTARA · 2010 to 2025
$14.5M
POSITIONAL CLONING OF THE MEN1 GENEZIAHG000029 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI CHANDRASEKHARAPPA, SETTARA · 2009 to 2025
$13.3M
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundTracheo-esophageal fistula (TEF) with/or without esophageal atresia (EA) is a common congenital malformation that is often accompanied by other anomalies. The causes of this condition are thought to be heterogeneous but are overall not well understood. CASE REPORT: We identified a patient with a TEF/EA, as well as cardiac and genitourinary anomalies, who was found to have a 0.7 Mb de novo deletion of chromosome 20q13.33. One gene within the deleted interval, GTPBP5, is of particular interest as a candidate gene.

conclusionsGTPBP5 bears further study as a cause of TEF/EA accompanied by other malformations.

Indexed as

Chromosome DeletionChromosomes, Human, Pair 20Genitalia, MaleHeart Defects, CongenitalHumansInfant, NewbornMaleMonomeric GTP-Binding ProteinsTracheoesophageal FistulaUrinary TractMonomeric GTP-Binding ProteinsMTG2 protein, human

Identifiers

PMID21608104
PMCPMC3193386
OpenAlexW2017341125

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.