Evidence map›Paper›PMID 21608014›Full record

ArticleJournal of cellular biochemistry2011

The bromodomain-containing gene BRD2 is regulated at transcription, splicing, and translation levels.

Enyuan Shang, Qingping Cui, Xiangyuan Wang, Cheryl Beseler, David A Greenberg, Debra J Wolgemuth

Abstract read
In one paragraph

Article in Journal of cellular biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Observational
  2. Review
  3. NAR genomics and bioinformatics · 2024
    Article
  4. Article
  5. Zebrafish ParalogsJournal of developmental biology · 2021
    Article
  6. Identification of a Bromodomain-containing Protein 2Korean journal for food science of animal resources · 2018
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Enyuan ShangDivision of Statistical Genetics, Department of Biostatistics, Mailman School of Public Health, Columbia University Medical Center, New York, New York 10032, USA.
Qingping Cui
Xiangyuan Wang
Cheryl Beseler
David A Greenberg
Debra J Wolgemuth
Columbia University Irving Medical Center · US

Funding

RESOLVING HETEROGENEITY IN EPILEPSY WITH GENETIC MARKERSR01NS027941 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GREENBERG, DAVID A. · 1990 to 2010
$9.0M
Function of the Bromodomain Protein Brdt in SpermatogenesisR01GM081767 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WOLGEMUTH, DEBRA J. · 2008 to 2016
$2.9M
Mechanisms of Genetic Seizure Susceptibility in Juvenile Myoclonic EpilepsyR01NS061829 · NINDS · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI GREENBERG, DAVID A. · 2009 to 2012
$2.0M
The Role of Genome-Coded ME2 in EpilepsyR21NS070323 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENBERG, DAVID A. · 2009 to 2010
$798k
Role of Intronic Variants Affecting Splicing in Juvenile Myoclonic EpilepsyR03DA027020 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WOLGEMUTH, DEBRA J. · 2009 to 2010
$341k
NIDA NIH HHS DA027020NIDA NIH HHS R03 DA027020NIGMS NIH HHS GM081767NIGMS NIH HHS R01 GM081767NINDS NIH HHS NS27941NINDS NIH HHS NS61829NINDS NIH HHS NS70323NINDS NIH HHS R01 NS027941NINDS NIH HHS R01 NS061829NINDS NIH HHS R21 NS070323
6 · The paper itself

Abstract

The human BRD2 gene has been linked and associated with a form of common epilepsy and electroencephalographic abnormalities. Disruption of Brd2 in the mouse revealed that it is essential for embryonic neural development and that viable Brd2(+/-) heterozygotes show both decreased GABAergic neuron counts and increased susceptibility to seizures. To understand the molecular mechanisms by which mis-expression of BRD2 might contribute to epilepsy, we examined its regulation at multiple levels. We discovered that BRD2 expresses distinct tissue-specific transcripts that originate from different promoters and have strikingly different lengths of 5' untranslated regions (5'UTR). We also experimentally confirmed the presence of a highly conserved, alternatively spliced exon, inclusion of which would result in a premature termination of translation. Downstream of this alternative exon is a polymorphic microsatellite (GT-repeats). Manipulation of the number of the GT-repeats revealed that the length of the GT-repeats affects the ratio of the two alternative splicing products. In vitro translation and expression in cultured cells revealed that among the four different mRNAs (long and short 5'UTR combined with regular and alternative splicing), only the regularly spliced mRNA with the short 5'UTR yields full-length protein. In situ hybridization and immunohistochemical studies showed that although Brd2 mRNA is expressed in both the hippocampus and cerebellum, Brd2 protein only can be detected in the cerebellar Purkinje cells and not in hippocampal cells. These multiple levels of regulation would likely affect the production of functional BRD2 protein during neural development and hence, its role in the etiology of seizure susceptibility.

Indexed as

Alternative SplicingBlotting, NorthernBrainBromodomain Containing ProteinsCell LineChromosomal Proteins, Non-HistoneExonsHumansImmunoblottingImmunohistochemistryIn Situ HybridizationIntronsMicrosatellite RepeatsPromoter Regions, GeneticProtein Serine-Threonine KinasesReverse Transcriptase Polymerase Chain ReactionBRD2 protein, humanBrd2 protein, mouseBromodomain Containing ProteinsChromosomal Proteins, Non-HistoneProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID21608014
PMCPMC3178676
OpenAlexW2058616231

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.