Evidence map›Paper›PMID 21605934›Full record

ArticleBiophysical chemistry2011

Stability, denaturation and refolding of Mycobacterium tuberculosis MfpA, a DNA mimicking protein that confers antibiotic resistance.

Sergei Khrapunov, Michael Brenowitz

Open access · greenAbstract read
In one paragraph

Article in Biophysical chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sergei KhrapunovDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA. khraps@einstein.yu.edu
Michael Brenowitz
Albert Einstein College of Medicine · US

Funding

Principles of Protein Mimicry of DNAR01GM079618 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BRENOWITZ, MICHAEL D. · 2008 to 2011
$1.4M
NIGMS NIH HHS R01 GM079618NIGMS NIH HHS R01GM079618
6 · The paper itself

Abstract

MfpA from Mycobacterium tuberculosis is a founding member of the pentapeptide repeat class of proteins (PRP) that is believed to confer bacterial resistance to the drug fluoroquinolone by mimicking the size, shape and surface charge of duplex DNA. We show that phenylalanine side chain stacking stabilizes the N-terminus of MfpA's pentapeptide thus extending the DNA mimicry analogy. The Lumry-Eyring model was applied to multiple spectral measures of MfpA denaturation revealing that the MfpA dimer dissociates to monomers which undergo a structural transition that leads to aggregation. MfpA retains high secondary and tertiary structure content under denaturing conditions. Dimerization stabilizes MfpA's pentapeptide repeat fold. The high Arrhenius activation energy of the barrier to aggregate formation rationalizes its stability. The mechanism of MfpA denaturation and refolding is a 'double funnel' energy landscape where the 'native' and 'aggregate' funnels are separated by the high barrier that is not overcome during in vitro refolding.

Indexed as

Bacterial ProteinsDrug Resistance, MicrobialModels, MolecularMonomeric GTP-Binding ProteinsMycobacterium tuberculosisProtein ConformationProtein DenaturationProtein StabilityProtein UnfoldingThermodynamicsBacterial ProteinsMfpA protein, Mycobacterium smegmatisMonomeric GTP-Binding Proteins

Identifiers

PMID21605934
PMCPMC3166997
OpenAlexW2073795158

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.