ArticlePloS one2011
Evolutionary time-scale of the begomoviruses: evidence from integrated sequences in the Nicotiana genome.
Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
28 citing papers in PubMed, 65 citations in OpenAlex.
- Phylogeographic analysis ofThe Journal of general virology · 2024Article
- Review
- Limited role of recombination in the global diversification of begomovirus DNA-B proteins.Virus research · 2023Article
- Role of Diversity and Recombination in the Emergence of Chilli Leaf Curl Virus.Pathogens (Basel, Switzerland) · 2022Article
- Chilli leaf curl disease populations in India are highly recombinant, and rapidly segregated.3 Biotech · 2022Article
- Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history.Scientific reports · 2021Article
- Frontiers in the Standardization of the Plant Platform for High Scale Production of Vaccines.Plants (Basel, Switzerland) · 2021Review
- Article
- ssDNA viruses: key players in global virome.Virusdisease · 2019Review
- Genome wide molecular evolution analysis of begomoviruses reveals unique diversification pattern in coat protein gene of Old World and New World viruses.Virusdisease · 2019Article
- Article
- An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides.PLoS pathogens · 2018Article
- Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.Genome biology and evolution · 2018Article
- Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection.Plant physiology · 2018Article
- African ancestry of New World, Bemisia tabaci-whitefly species.Scientific reports · 2018Article
- Article
- Time-Dependent Rate Phenomenon in Viruses.Journal of virology · 2016Article
- Two Novel DNAs That Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease.Journal of virology · 2016Article
- Global-scale computational analysis of genomic sequences reveals the recombination pattern and coevolution dynamics of cereal-infecting geminiviruses.Scientific reports · 2015Article
- Tobamoviruses have probably co-diverged with their eudicotyledonous hosts for at least 110 million years.Virus evolution · 2015Article
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Authors and funding
7 authors at 5 institutions in 5 countries.
Funding
Abstract
Despite having single stranded DNA genomes that are replicated by host DNA polymerases, viruses in the family Geminiviridae are apparently evolving as rapidly as some RNA viruses. The observed substitution rates of geminiviruses in the genera Begomovirus and Mastrevirus are so high that the entire family could conceivably have originated less than a million years ago (MYA). However, the existence of geminivirus related DNA (GRD) integrated within the genomes of various Nicotiana species suggests that the geminiviruses probably originated >10 MYA. Some have even suggested that a distinct New-World (NW) lineage of begomoviruses may have arisen following the separation by continental drift of African and American proto-begomoviruses ∼110 MYA. We evaluate these various geminivirus origin hypotheses using Bayesian coalescent-based approaches to date firstly the Nicotiana GRD integration events, and then the divergence of the NW and Old-World (OW) begomoviruses. Besides rejecting the possibility of a<2 MYA OW-NW begomovirus split, we could also discount that it may have occurred concomitantly with the breakup of Gondwanaland 110 MYA. Although we could only confidently narrow the date of the split down to between 2 and 80 MYA, the most plausible (and best supported) date for the split is between 20 and 30 MYA--a time when global cooling ended the dispersal of temperate species between Asia and North America via the Beringian land bridge.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.