Evidence map›Paper›PMID 21602568›Full record

ArticleThe Journal of biological chemistry2011

Molecular mechanism of selective recruitment of Syk kinases by the membrane antigen-receptor complex.

Peter J Bond, José D Faraldo-Gómez

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Non-degradative Ubiquitination of Protein Kinases.PLoS computational biology · 2016
    Article
  6. Article
  7. Two-state dynamics of the SH3-SH2 tandem of Abl kinase and the allosteric role of the N-cap.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Peter J BondMax Planck Institute of Biophysics and the Cluster of Excellence Macromolecular Complexes, 60438 Frankfurt am Main, Germany.
José D Faraldo-Gómez
Max Planck Society · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ZAP-70 and Syk are essential tyrosine kinases in intracellular immunological signaling. Both contain an inhibitory SH2 domain tandem, which assembles onto the catalytic domain. Upon binding to doubly phosphorylated ITAM motifs on activated antigen receptors, the arrangement of the SH2 domains changes. From available structures, this event is not obviously conducive to dissociation of the autoinhibited complex, yet it ultimately translates into kinase activation through a mechanism not yet understood. We present a comprehensive theoretical study of this molecular mechanism, using atomic resolution simulations and free-energy calculations, totaling >10 μs of simulation time. Through these, we dissect the microscopic mechanism coupling stepwise ITAM engagement and SH2 tandem structural change and reveal key differences between ZAP-70 and Syk. Importantly, we show that a subtle conformational bias in the inter-SH2 connector causes ITAM to bind preferentially to kinase-dissociated tandems. We thus propose that phosphorylated antigen receptors selectively recruit kinases that are uninhibited and that the resulting population shift in the membrane vicinity sustains signal transduction.

Indexed as

Molecular Dynamics Simulationsrc Homology DomainsAmino Acid MotifsCell MembraneEnzyme StabilityIntracellular Signaling Peptides and ProteinsProtein BindingProtein-Tyrosine KinasesReceptors, AntigenSubstrate SpecificitySyk KinaseThermodynamicsZAP-70 Protein-Tyrosine KinaseIntracellular Signaling Peptides and ProteinsProtein-Tyrosine KinasesReceptors, AntigenSyk KinaseZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID21602568
PMCPMC3138262
OpenAlexW2012748949

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.