Evidence map›Paper›PMID 21599534›Full record

ReviewCritical reviews in biochemistry and molecular biology2011

Metabolism as a key to histone deacetylase inhibition.

Praveen Rajendran, David E Williams, Emily Ho, Roderick H Dashwood

Open access · greenAbstract readReview
In one paragraph

Review in Critical reviews in biochemistry and molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Review
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  7. Article
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  9. Article
  10. Review
  11. Review
  12. Aging · 2019
    Article
  13. Article
  14. Article
  15. Histone Deacetylases (HDACs) Guided Novel Therapies for T-cell lymphomas.International journal of medical sciences · 2019
    Review
  16. Article
  17. Dietary Modulation of the Epigenome.Physiological reviews · 2018
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Praveen RajendranLinus Pauling Institute, Oregon State University, Corvallis, OR, USA.
David E Williams
Emily Ho
Roderick H Dashwood
Oregon State University · US

Funding

Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
Transplacental Chemoprevention of Lung Tumors and LymphomasP01CA090890 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI DASHWOOD, RODERICK H · 2003 to 2014
$14.2M
Dietary HDAC Inhibitors in Colon Cancer PreventionR01CA122959 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI DASHWOOD, RODERICK H · 2008 to 2023
$4.3M
Dietary histone deactylase inhibitors in prostate cancer preventionR01CA122906 · NCI · OREGON STATE UNIVERSITY · PI HO, EMILY · 2007 to 2011
$2.0M
Modulation of Colon Carcinogenesis by ChlorophyllinR01CA065525 · NCI · OREGON STATE UNIVERSITY · PI DASHWOOD, RODERICK H · 2004 to 2008
$1.5M
BETA CATENIN MUTATION IN PHIP AND IQ INDUCED COLON CAR01CA080176 · NCI · OREGON STATE UNIVERSITY · PI DASHWOOD, RODERICK H · 2000 to 2004
$1.3M
MODULATION OF COLON CARCINOGENESIS BY CHLOROPHYLLINR29CA065525 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI DASHWOOD, RODERICK H · 1996 to 2000
$99k
NCI NIH HHS CA122906NCI NIH HHS CA122959NCI NIH HHS CA65525NCI NIH HHS CA80176NCI NIH HHS CA90890NCI NIH HHS P01 CA090890NCI NIH HHS R01 CA065525NCI NIH HHS R01 CA080176NCI NIH HHS R01 CA122906NCI NIH HHS R01 CA122959NCI NIH HHS R29 CA065525NIEHS NIH HHS P30 ES000210NIEHS NIH HHS P30ES00210
6 · The paper itself

Abstract

There is growing interest in the epigenetic mechanisms that are dysregulated in cancer and other human pathologies. Under this broad umbrella, modulators of histone deacetylase (HDAC) activity have gained interest as both cancer chemopreventive and therapeutic agents. Of the first generation, FDA-approved HDAC inhibitors to have progressed to clinical trials, vorinostat represents a "direct acting" compound with structural features suitable for docking into the HDAC pocket, whereas romidepsin can be considered a prodrug that undergoes reductive metabolism to generate the active intermediate (a zinc-binding thiol). It is now evident that other agents, including those in the human diet, can be converted by metabolism to intermediates that affect HDAC activity. Examples are cited of short-chain fatty acids, seleno-α-keto acids, small molecule thiols, mercapturic acid metabolites, indoles, and polyphenols. The findings are discussed in the context of putative endogenous HDAC inhibitors generated by intermediary metabolism (e.g. pyruvate), the yin-yang of HDAC inhibition versus HDAC activation, and the screening assays that might be most appropriate for discovery of novel HDAC inhibitors in the future.

Indexed as

EpigenomicsAcetylationAntineoplastic AgentsChemopreventionChromatin Assembly and DisassemblyDepsipeptidesEpigenesis, GeneticFatty Acids, VolatileFlavonoidsHistone Deacetylase InhibitorsHistone DeacetylasesHumansHydroxamic AcidsIndolesIsothiocyanatesNeoplasmsAntineoplastic AgentsDepsipeptidesFatty Acids, VolatileFlavonoidsHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsIndolesIsothiocyanatesOrganoselenium CompoundsPhenolsPolyphenolsProdrugsromidepsinSulfur CompoundsVorinostat

Identifiers

PMID21599534
PMCPMC3254183
OpenAlexW2024473923

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.