ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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33 citing papers in PubMed, 67 citations in OpenAlex.
- A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species.Genome biology · 2026Article
- Polygenic architecture of flowering time and its relationship with local environments in the grass Brachypodium distachyon.Genetics · 2024Article
- The evolution of transposable elements ineLife · 2024Article
- Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes.Molecular ecology · 2022Article
- Diversity, dynamics and effects of long terminal repeat retrotransposons in the model grass Brachypodium distachyon.The New phytologist · 2020Article
- Never the Two Shall Mix: Robust Indel Markers to Ensure the Fidelity of Two Pivotal and Closely-Related Accessions ofPlants (Basel, Switzerland) · 2019Article
- A high density SLAF-SNP genetic map and QTL detection for fibre quality traits in Gossypium hirsutum.BMC genomics · 2018Article
- Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing.Frontiers in plant science · 2018Article
- Natural Variation in Brachypodium Links Vernalization and Flowering Time Loci as Major Flowering Determinants.Plant physiology · 2017Article
- Quantitative Trait Loci Associated with Drought Tolerance inFrontiers in plant science · 2017Article
- Gene Evolutionary Trajectories and GC Patterns Driven by Recombination inFrontiers in plant science · 2016Article
- Using a Candidate Gene-Based Genetic Linkage Map to Identify QTL for Winter Survival in Perennial Ryegrass.PloS one · 2016Article
- Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species.G3 (Bethesda, Md.) · 2015Article
- Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes.Genome biology · 2015Article
- Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.Scientific reports · 2015Article
- Enhanced oxidative stress resistance through activation of a zinc deficiency transcription factor in Brachypodium distachyon.Plant physiology · 2014Article
- The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression.The Plant journal : for cell and molecular biology · 2014Article
- Interaction of photoperiod and vernalization determines flowering time of Brachypodium distachyon.Plant physiology · 2014Article
- Unlocking Triticeae genomics to sustainably feed the future.Plant & cell physiology · 2013Review
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Corrections and comments
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Authors and funding
8 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The small annual grass Brachypodium distachyon (Brachypodium) is rapidly emerging as a powerful model system to study questions unique to the grasses. Many Brachypodium resources have been developed including a whole genome sequence, highly efficient transformation and a large germplasm collection. We developed a genetic linkage map of Brachypodium using single nucleotide polymorphism (SNP) markers and an F(2) mapping population of 476 individuals. SNPs were identified by targeted resequencing of single copy genomic sequences. Using the Illumina GoldenGate Genotyping platform we placed 558 markers into five linkage groups corresponding to the five chromosomes of Brachypodium. The unusually long total genetic map length, 1,598 centiMorgans (cM), indicates that the Brachypodium mapping population has a high recombination rate. By comparing the genetic map to genome features we found that the recombination rate was positively correlated with gene density and negatively correlated with repetitive regions and sites of ancestral chromosome fusions that retained centromeric repeat sequences. A comparison of adjacent genome regions with high versus low recombination rates revealed a positive correlation between interspecific synteny and recombination rate.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.