Evidence map›Paper›PMID 21597964›Full record

ArticleHuman genetics2011

Haplotype structure in Ashkenazi Jewish BRCA1 and BRCA2 mutation carriers.

Kate M Im, Tomas Kirchhoff, Xianshu Wang, Todd Green, Clement Y Chow, Joseph Vijai, Joshua Korn, Mia M Gaudet, Zachary Fredericksen, V Shane Pankratz and 111 more

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
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  6. Cancer in wildlife: patterns of emergence.Nature reviews. Cancer · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

121 authors at 20 institutions in 15 countries.

Kate M ImCenter for Cancer Research, Cancer Inflammation Program, Human Genetics Section, National Cancer Institute, Frederick, MD, USA.
Tomas Kirchhoff
Xianshu Wang
Todd Green
Clement Y Chow
Joseph Vijai
Joshua Korn
Mia M Gaudet
Zachary Fredericksen
V Shane Pankratz
Candace Guiducci
Andrew Crenshaw
Lesley McGuffog
Christiana Kartsonaki
Jonathan Morrison
Sue Healey
Olga M Sinilnikova
Phuong L Mai
Mark H Greene
Marion Piedmonte
Wendy S Rubinstein
HEBON
Frans B Hogervorst
Matti A Rookus
J Margriet Collée
Nicoline Hoogerbrugge
Christi J van Asperen
Hanne E J Meijers-Heijboer
Cees E Van Roozendaal
Trinidad Caldes
Pedro Perez-Segura
Anna Jakubowska
Jan Lubinski
Tomasz Huzarski
Paweł Blecharz
Heli Nevanlinna
Kristiina Aittomäki
Conxi Lazaro
Ignacio Blanco
Rosa B Barkardottir
Marco Montagna
Emma D'Andrea
kConFab
Peter Devilee
Olufunmilayo I Olopade
Susan L Neuhausen
Bernard Peissel
Bernardo Bonanni
Paolo Peterlongo
Christian F Singer
Gad Rennert
Flavio Lejbkowicz
Irene L Andrulis
Gord Glendon
Hilmi Ozcelik
Ontario Cancer Genetics Network
Amanda Ewart Toland
Maria Adelaide Caligo
SWE-BRCA
Mary S Beattie
Salina Chan
UKFOCR
Susan M Domchek
Katherine L Nathanson
Timothy R Rebbeck
Catherine Phelan
Steven Narod
Esther M John
John L Hopper
Saundra S Buys
Mary B Daly
Melissa C Southey
Mary-Beth Terry
Nadine Tung
Thomas V O Hansen
Ana Osorio
Javier Benitez
Mercedes Durán
Jeffrey N Weitzel
Judy Garber
Ute Hamann
EMBRACE
Susan Peock
Margaret Cook
Clare T Oliver
Debra Frost
Radka Platte
D Gareth Evans
Ros Eeles
Louise Izatt
Joan Paterson
Carole Brewer
Shirley Hodgson
Patrick J Morrison
Mary Porteous
Lisa Walker
Mark T Rogers
Lucy E Side
Andrew K Godwin
Rita K Schmutzler
Barbara Wappenschmidt
Yael Laitman
Alfons Meindl
Helmut Deissler
Raymonda Varon-Mateeva
Sabine Preisler-Adams
Karin Kast
Laurence Venat-Bouvet
Dominique Stoppa-Lyonnet
Georgia Chenevix-Trench
Douglas F Easton
Robert J Klein
Mark J Daly
Eitan Friedman
Michael Dean
Andrew G Clark
David M Altshuler
Antonis C Antoniou
Fergus J Couch
Kenneth Offit
Bert Gold
University of Cambridge · GBBoston University · USMemorial Sloan Kettering Cancer Center · USHarvard University · USInstitut d'Investigació Biomédica de Bellvitge · ESMount Sinai Hospital · CACornell University · USFox Chase Cancer Center · USMayo Clinic · USQIMR Berghofer Medical Research Institute · AUSheba Medical Center · ILThe University of Melbourne · AUAmerican Cancer Society · USCity of Hope · USErasmus MC · NLFrederick National Laboratory for Cancer Research · USGerman Cancer Research Center · DEGreat Ormond Street Hospital · GBGuy's and St Thomas' NHS Foundation Trust · GBHelsinki University Hospital · FI

Funding

Clinical Genetic Studies of Familial and Hereditary Cancer SyndromesZIACP010144 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$111.8M
CANCER AND INFLAMMATION GENETICSZIABC011300 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DEAN, MICHAEL · 2010 to 2015
$5.8M
A genome-wide association study for breast cancer in BRCA1 mutation carriersR01CA128978 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2008 to 2012
$4.8M
CANCER AND INFLAMMATION: FUNCTION AND THERAPYZIABC011301 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DEAN, MICHAEL · 2010 to 2015
$4.1M
BRCA2 missense mutations and breast cancerR01CA116167 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2007 to 2011
$3.0M
BRCA1 and BRCA2 missense mutations and breast cancer riskU01CA116167 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2013 to 2017
$2.7M
Clinical Cancer Genetics Community Network: A Sustainable Research PartnershipRC4CA153828 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI WEITZEL, JEFFREY N · 2010 to 2010
$1.0M
Cancer Research UK 10118Cancer Research UK 11022Cancer Research UK 11174Cancer Research UK C1287/A10118Cancer Research UK C1287/A11990Cancer Research UK C5047/A8385Intramural NIH HHS ZIA BC011301NCI NIH HHS CA- 06-503NCI NIH HHS CA116167NCI NIH HHS R01 CA116167NCI NIH HHS R01 CA128978NCI NIH HHS RC4 CA153828
6 · The paper itself

Abstract

Three founder mutations in BRCA1 and BRCA2 contribute to the risk of hereditary breast and ovarian cancer in Ashkenazi Jews (AJ). They are observed at increased frequency in the AJ compared to other BRCA mutations in Caucasian non-Jews (CNJ). Several authors have proposed that elevated allele frequencies in the surrounding genomic regions reflect adaptive or balancing selection. Such proposals predict long-range linkage disequilibrium (LD) resulting from a selective sweep, although genetic drift in a founder population may also act to create long-distance LD. To date, few studies have used the tools of statistical genomics to examine the likelihood of long-range LD at a deleterious locus in a population that faced a genetic bottleneck. We studied the genotypes of hundreds of women from a large international consortium of BRCA1 and BRCA2 mutation carriers and found that AJ women exhibited long-range haplotypes compared to CNJ women. More than 50% of the AJ chromosomes with the BRCA1 185delAG mutation share an identical 2.1 Mb haplotype and nearly 16% of AJ chromosomes carrying the BRCA2 6174delT mutation share a 1.4 Mb haplotype. Simulations based on the best inference of Ashkenazi population demography indicate that long-range haplotypes are expected in the context of a genome-wide survey. Our results are consistent with the hypothesis that a local bottleneck effect from population size constriction events could by chance have resulted in the large haplotype blocks observed at high frequency in the BRCA1 and BRCA2 regions of Ashkenazi Jews.

Indexed as

ArthritisBase SequenceBRCA1 ProteinBRCA2 ProteinComputer SimulationDeafnessFemaleFounder EffectGenotypeHaplotypesHeterozygoteHumansJewsPolychondritis, RelapsingSequence DeletionBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, human

Identifiers

PMID21597964
PMCPMC3196382
OpenAlexW2066739450

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.