Evidence map›Paper›PMID 21596365›Full record

ArticleAmerican journal of human genetics2011

Mutations in ZBTB24 are associated with immunodeficiency, centromeric instability, and facial anomalies syndrome type 2.

Jessica C de Greef, Jun Wang, Judit Balog, Johan T den Dunnen, Rune R Frants, Kirsten R Straasheijm, Caner Aytekin, Mirjam van der Burg, Laurence Duprez, Alina Ferster and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 197 citations in OpenAlex.

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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 6 countries.

Jessica C de GreefDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Jun WangDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Judit BalogDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Johan T den DunnenDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Rune R FrantsDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Kirsten R StraasheijmDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Caner AytekinDepartment of Pediatric Immunology, Dr. Sami Ulus Children's Health and Diseases Training and Research Center, 06080 Ankara, Turkey.
Mirjam van der BurgDepartment of Immunology, Erasmus Medical Center, University Medical Center Rotterdam, 3015 CE Rotterdam, The Netherlands.
Laurence DuprezDepartment of Medical Genetics, Hôpital Erasme-Université Libre de Bruxelles, 1070 Brussels, Belgium.
Alina FersterDepartment of Paediatrics, Haemato-Oncology Unit, Hôpital Universitaire des Enfants Reine Fabiola- Université Libre de Bruxelles, 1020 Brussels, Belgium.
Andrew R GenneryDepartment of Paediatric Immunology, Newcastle Upon Tyne Hospital, NHS Foundation Trust, Newcastle Upon Tyne, UK and Institute of Cellular Medicine, Newcastle University, Newcastle Upon Tyne NE7 7DN, UK.
Giorgio GimelliLaboratorio di Citogenetica, Instituto Giannina Gaslini, 16148 Genoa, Italy.
Ismail ReisliDepartment of Pediatric Immunology and Allergy, Selcuk University, 42003 Konya, Turkey.
Catharina SchuetzDepartment of Pediatrics and Adolescent Medicine, University Hospital Ulm, 89075 Ulm, Germany.
Ansgar SchulzDepartment of Pediatrics and Adolescent Medicine, University Hospital Ulm, 89075 Ulm, Germany.
Dominique F C M SmeetsDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, 6526 GA Nijmegen, The Netherlands.
Yves SznajerPediatric Clinical Genetics and Center for Human Genetics, Hôpital Universitaire des Enfants Reine Fabiola (HUDERF), 1020 Brussels, Belgium.
Cisca WijmengaGenetics Department, University Medical Center and Groningen University, 9713 GZ Groningen, The Netherlands.
Marja C van EggermondDepartment of Immunohematology and Blood Transfusion, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Monique M van Ostaijen-Ten DamDepartment of Pediatrics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Arjan C LankesterDepartment of Pediatrics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Maarten J D van TolDepartment of Pediatrics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
Peter J van den ElsenDepartment of Immunohematology and Blood Transfusion, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands; Department of Pathology, Vrije Universiteit University Medical Center, 1081 HV Amsterdam, The Netherlands.
Corry M WeemaesDepartment of Paediatric Infectious Diseases and Immunology, Radboud University Nijmegen Medical Centre, 6526 GA Nijmegen, The Netherlands.
Silvère M van der MaarelDepartment of Human Genetics, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands. Electronic address: maarel@lumc.nl.
Leiden University Medical Center · NLRadboud University Nijmegen · NLUniversité Libre de Bruxelles · BEUniversity Hospital Ulm · DEDr Sami Ulus Çocuk Sağlığı ve Hastalıkları Eğitim ve Araştırma Hastanesi · TRErasmus MC · NLIstituto Giannina Gaslini · ITNewcastle upon Tyne Hospitals NHS Foundation Trust · GBQueen Fabiola Children's University Hospital · BESelçuk University · TRUniversity Medical Center Groningen · NL

Funding

Identification of the gene defect underlying ICF2 syndromeR21AI090135 · NIAID · LEIDEN UNIVERSITY MEDICAL CENTER · PI VAN DER MAAREL, SILVERE M · 2010 to 2011
$262k
NIAID NIH HHS R21 AI090135
6 · The paper itself

Abstract

Autosomal-recessive immunodeficiency, centromeric instability, and facial anomalies (ICF) syndrome is mainly characterized by recurrent, often fatal, respiratory and gastrointestinal infections. About 50% of patients carry mutations in the DNA methyltransferase 3B gene (DNMT3B) (ICF1). The remaining patients carry unknown genetic defects (ICF2) but share with ICF1 patients the same immunological and epigenetic features, including hypomethylation of juxtacentromeric repeat sequences. We performed homozygosity mapping in five unrelated ICF2 patients with consanguineous parents and then performed whole-exome sequencing in one of these patients and Sanger sequencing in all to identify mutations in the zinc-finger- and BTB (bric-a-bric, tramtrack, broad complex)-domain-containing 24 (ZBTB24) gene in four consanguineously descended ICF2 patients. Additionally, we found ZBTB24 mutations in an affected sibling pair and in one patient for whom it was not known whether his parents were consanguineous. ZBTB24 belongs to a large family of transcriptional repressors that include members, such as BCL6 and PATZ1, with prominent regulatory roles in hematopoietic development and malignancy. These data thus indicate that ZBTB24 is involved in DNA methylation of juxtacentromeric DNA and in B cell development and/or B and T cell interactions. Because ZBTB24 is a putative DNA-binding protein highly expressed in the lymphoid lineage, we predict that by studying the molecular function of ZBTB24, we will improve our understanding of the molecular pathophysiology of ICF syndrome and of lymphocyte biology in general.

Indexed as

Zinc FingersAdolescentAdultCentromereChildChild, PreschoolDNA MethylationDNA Mutational AnalysisEpigenomicsFaceFemaleHumansImmunologic Deficiency SyndromesMaleMutationPedigreeRepressor ProteinsZBTB24 protein, human

Identifiers

PMID21596365
PMCPMC3113345
OpenAlexW2065772381

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.