Evidence map›Paper›PMID 21593585›Full record

ReviewRNA biology

Coronaviruses: an RNA proofreading machine regulates replication fidelity and diversity.

Mark R Denison, Rachel L Graham, Eric F Donaldson, Lance D Eckerle, Ralph S Baric

Open access · bronzeAbstract readReview
In one paragraph

Review in RNA biology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 331 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
331citing papers in PubMed, 2 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

331 citing papers in PubMed, 2 syntheses or guidelines pooled it, 518 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
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  7. Article
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  12. Article
  13. Suidae Coronaviruses: Epidemiology, Transmission, and Molecular Diagnosis.Animals : an open access journal from MDPI · 2026
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Discovery of Galloyl-Flavonoid Conjugates as SARS-CoV-2 3CLInternational journal of molecular sciences · 2025
    Article
  19. Article
  20. Article

271 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mark R DenisonDepartment of Pediatrics and Microbiology & Immunology, Vanderbilt University Medical Center, Nashville, TN, USA.
Rachel L Graham
Eric F Donaldson
Lance D Eckerle
Ralph S Baric
Vanderbilt University Medical Center · USCommunities In Schools of Orange County · USUniversity of North Carolina at Chapel Hill · US

Funding

Yessinia autotransporters (Yaps): Structure, function, and host responseU54AI057157 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ACCAVITTI-LOPER, MARY ANN V · 2003 to 2013
$91.4M
POLYMERASE PROTEINS IN CORONAVIRUS REPLICATIONR01AI026603 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENISON, MARK R · 1994 to 2014
$4.1M
Cellular &Molecular Microbiology Postgraduate TrainingT32AI049824 · NIAID · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 2001 to 2005
$1.1M
SARS-CoV Transcription Network Remodeling and the Attenuation of PathogenesisF32AI080148 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRAHAM, RACHEL LAUREN · 2008 to 2010
$155k
NIAID NIH HHS F32 AI080148NIAID NIH HHS F32-AI080148NIAID NIH HHS HHSN272200800060CNIAID NIH HHS R01 AI026603NIAID NIH HHS R01-AI26603NIAID NIH HHS T32 AI049824NIAID NIH HHS T32-AI049824NIAID NIH HHS U54 AI057157NIAID NIH HHS U54-AI057157
6 · The paper itself

Abstract

In order to survive and propagate, RNA viruses must achieve a balance between the capacity for adaptation to new environmental conditions or host cells with the need to maintain an intact and replication competent genome. Several virus families in the order Nidovirales, such as the coronaviruses (CoVs) must achieve these objectives with the largest and most complex replicating RNA genomes known, up to 32 kb of positive-sense RNA. The CoVs encode sixteen nonstructural proteins (nsp 1-16) with known or predicted RNA synthesis and modification activities, and it has been proposed that they are also responsible for the evolution of large genomes. The CoVs, including murine hepatitis virus (MHV) and SARS-CoV, encode a 3'-to-5' exoribonuclease activity (ExoN) in nsp14. Genetic inactivation of ExoN activity in engineered SARS-CoV and MHV genomes by alanine substitution at conserved DE-D-D active site residues results in viable mutants that demonstrate 15- to 20-fold increases in mutation rates, up to 18 times greater than those tolerated for fidelity mutants of other RNA viruses. Thus nsp14-ExoN is essential for replication fidelity, and likely serves either as a direct mediator or regulator of a more complex RNA proofreading machine, a process previously unprecedented in RNA virus biology. Elucidation of the mechanisms of nsp14-mediated proofreading will have major implications for our understanding of the evolution of RNA viruses, and also will provide a robust model to investigate the balance between fidelity, diversity and pathogenesis. The discovery of a protein distinct from a viral RdRp that regulates replication fidelity also raises the possibility that RNA genome replication fidelity may be adaptable to differing replication environments and selective pressures, rather than being a fixed determinant.

Indexed as

MutationVirus ReplicationAnimalsCoronavirusEvolution, MolecularGenome, ViralHumansRNA, ViralRNA, Viral

Identifiers

PMID21593585
PMCPMC3127101
OpenAlexW1965669216

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.