ArticleJournal of virology2011
Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community.
Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
33 citing papers in PubMed, 48 citations in OpenAlex.
- Campus-based genomic surveillance uncovers early emergence of a future dominant A(H3N2) influenza clade.iScience · 2025Article
- Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data.Scientific reports · 2024Article
- Article
- Secondary attack rates from asymptomatic and symptomatic influenza virus shedders in hospitals: Results from the TransFLUas influenza transmission study.Infection control and hospital epidemiology · 2022Article
- Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018.Viruses · 2021Article
- Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting.BMC infectious diseases · 2021Article
- Article
- Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics.PLoS pathogens · 2020Article
- Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season.Virus evolution · 2020Article
- What can urban mobility data reveal about the spatial distribution of infection in a single city?BMC public health · 2019Article
- Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building.Epidemics · 2019Review
- Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography.Virus evolution · 2019Article
- Using Clinical Research Networks to Assess Severity of an Emerging Influenza Pandemic.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2018Observational
- Design of peptide epitope from the neuraminidase protein of influenza A and influenza B towards short peptide vaccine development.Bioinformation · 2018Article
- Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses.PLoS pathogens · 2017Article
- Article
- Network inference from multimodal data: A review of approaches from infectious disease transmission.Journal of biomedical informatics · 2016Review
- Nasal commensal Staphylococcus epidermidis counteracts influenza virus.Scientific reports · 2016Article
- Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection.Nature communications · 2015Article
- Healthy bodies, toxic medicines: college students and the rhetorics of flu vaccination.The Yale journal of biology and medicine · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
16 authors at 6 institutions in 1 country.
Funding
Abstract
Despite growing interest in the molecular epidemiology of influenza virus, the pattern of viral spread within individual communities remains poorly understood. To determine the phylogeography of influenza virus in a single population, we examined the spatial diffusion of H1N1/09 influenza A virus within the student body of the University of California, San Diego (UCSD), sampling for a 1-month period between October and November 2009. Despite the highly focused nature of our study, an analysis of complete viral genome sequences revealed between 24 and 33 independent introductions of H1N1/09 into the UCSD community, comprising much of the global genetic diversity in this virus. These data were also characterized by a relatively low level of on-campus transmission as well as extensive spatial mixing, such that there was little geographical clustering by either student residence or city ZIP code. Most notably, students experiencing illness on the same day and residing in the same dorm possessed phylogenetically distinct lineages. H1N1/09 influenza A virus is therefore characterized by a remarkable spatial fluidity, which is likely to impede community-based methods for its control, including class cancellations, quarantine, and chemoprophylaxis.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.