Evidence map›Paper›PMID 21593159›Full record

ArticleJournal of virology2011

Virion structure of baboon reovirus, a fusogenic orthoreovirus that lacks an adhesion fiber.

Xiaodong Yan, Kristin N Parent, Russell P Goodman, Jinghua Tang, Jingyun Shou, Max L Nibert, Roy Duncan, Timothy S Baker

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. NgR1 binding to reovirus reveals an unusual bivalent interaction and a new viral attachment protein.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Article
  3. Article
  4. Viral Capsid and Polymerase in Reoviridae.Sub-cellular biochemistry · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. A Real-Time 3D Reconstruction System for Screening Icosahedral Particles Under Different Conditions at the Microscope.Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2013
    Article
  9. Article
  10. Article
  11. Cryo-EM structure of a transcribing cypovirus.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Xiaodong YanDepartment of Chemistry and Biochemistry, University of California-San Diego, La Jolla, CA 92093, USA.
Kristin N Parent
Russell P Goodman
Jinghua Tang
Jingyun Shou
Max L Nibert
Roy Duncan
Timothy S Baker
University of California, San Diego · USDalhousie University · CAHarvard University · US

Funding

VIRUS ASSEMBLY AND TRANSMISSIONP01AI045976 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1999 to 2008
$8.8M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
TRANSMISSION ELECTRON MICROSCOPE: STRUCTURAL &CELL BIOL: MEMBRANE TRANSPORT, GAS10RR020016 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2004
$2.0M
REOVIRUS OUTER-CAPSID ASSEMBLY &FUNCTIONS IN CELL ENTRYR01AI046440 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI NIBERT, MAX L. · 2001 to 2005
$1.7M
Electron cryo-microscopy of phage P22F32AI078624 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PARENT, KRISTIN N · 2009 to 2010
$98k
CIHR 100584CIHR 13723NCRR NIH HHS 1S10 RR-020016NCRR NIH HHS S10 RR020016NIAID NIH HHS F32 AI078624NIAID NIH HHS P01 AI045976NIAID NIH HHS R01 AI046440NIAID NIH HHS R01 AI46440NIGMS NIH HHS R37 GM-033050NIGMS NIH HHS R37 GM033050
6 · The paper itself

Abstract

Baboon reovirus (BRV) is a member of the fusogenic subgroup of orthoreoviruses. Unlike most other members of its genus, BRV lacks S-segment coding sequences for the outer fiber protein that binds to cell surface receptors. It shares this lack with aquareoviruses, which constitute a related genus and are also fusogenic. We used electron cryomicroscopy and three-dimensional image reconstruction to determine the BRV virion structure at 9.0-Å resolution. The results show that BRV lacks a protruding fiber at its icosahedral 5-fold axes or elsewhere. The results also show that BRV is like nonfusogenic mammalian and fusogenic avian orthoreoviruses in having 150 copies of the core clamp protein, not 120 as in aquareoviruses. On the other hand, there are no hub-and-spoke complexes attributable to the outer shell protein in the P2 and P3 solvent channels of BRV, which makes BRV like fusogenic avian orthoreoviruses and aquareoviruses but unlike nonfusogenic mammalian orthoreoviruses. The outermost "flap" domains of the BRV core turret protein appear capable of conformational variability within the virion, a trait previously unseen among other ortho- and aquareoviruses. New cDNA sequence determinations for the BRV L1 and M2 genome segments, encoding the core turret and outer shell proteins, were helpful for interpreting the structural features of those proteins. Based on these findings, we conclude that the evolution of ortho- and aquareoviruses has included a series of discrete gains or losses of particular components, several of which cross taxonomic boundaries. Gain or loss of adhesion fibers is one of several common themes in double-stranded RNA virus evolution.

Indexed as

Amino Acid SequenceAnimalsChlorocebus aethiopsCryoelectron MicroscopyMicroscopy, Electron, TransmissionMolecular Sequence DataOrthoreovirusPhylogenyProtein ConformationSequence Homology, Amino AcidVero CellsVirion

Identifiers

PMID21593159
PMCPMC3147939
OpenAlexW2047946045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.