Evidence map›Paper›PMID 21593154›Full record

ArticleJournal of virology2011

Epithelial cell retention of transcriptionally active, P3HR-1-derived heterogeneous Epstein-Barr virus DNA with concurrent loss of parental virus.

Kazufumi Ikuta, Mingyu Ding, Fangfang Zhang, John W Sixbey, Rona S Scott

Abstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kazufumi IkutaCenter for Molecular and Tumor Virology, LSU Health Sciences Center, 1501 Kings Highway, Shreveport, LA 71130, USA.
Mingyu Ding
Fangfang Zhang
John W Sixbey
Rona S Scott

Funding

RECRUITMENT YEAR FOR PI#5P20RR018724 · NCRR · LOUISIANA STATE UNIV HSC SHREVEPORT · PI O'CALLAGHAN, DENNIS JOHN · 2003 to 2011
$16.1M
EPSTEIN-BARR VIRUS INDUCED GENOMIC INSTABILITYR01CA067372 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SIXBEY, JOHN W · 1995 to 2005
$1.6M
Epstein-Barr Virus-Enhanced Tumor ProgressionR01CA114416 · NCI · LOUISIANA STATE UNIV HSC SHREVEPORT · PI SCOTT, RONA S · 2006 to 2010
$1.4M
NCI NIH HHS CA114416NCI NIH HHS CA67372NCI NIH HHS R01 CA067372NCI NIH HHS R01 CA114416NCRR NIH HHS P20 RR018724
6 · The paper itself

Abstract

Deleted, rearranged, heterogeneous (het) Epstein-Barr virus (EBV) DNA with the distinctive capability of disrupting EBV latency has been reported in biopsy samples of EBV-associated tumors whose onset in immunocompetent hosts is characteristically preceded by an antibody response indicative of EBV reactivation. Using the EBV P3HR-1 strain, we have reproduced in long-term culture of SVK epithelial cells an unusual pattern of infection previously observed in a subset of tumor biopsy samples: the persistence of het DNA in the absence of the parental helper virus. Fluorescence in situ hybridization (FISH) of infected cell subclones indicated the retention of het DNA in an integrated form. Incorporation of an intact het DNA molecule was confirmed by PCR, using primers that framed junctions of the four rearranged EBV DNA segments comprising P3HR-1-derived het DNA. Structural analysis of EBV terminal repeats revealed a banding pattern consistent with the integration of het DNA as a concatemer. Linkage of concatemeric monomers was defined at a nucleotide level, and that junctional sequence was detected in cell-free P3HR-1 virion DNA, confirming that subgenomic het DNA was packaged into infectious particles in a concatemeric configuration. Stable integration into cells having lost the standard viral genome allowed the unambiguous designation of het DNA as the source for viral gene products potentially encoded by both. Continuous expression of the latency-to-lytic switch protein Zta and detection of the BALF4 gene product gB, known to expand the target cell range of standard virus when incorporated at augmented levels into infectious progeny, add to a presumption of het DNA-enhanced pathogenesis in diseases of EBV reactivation.

Indexed as

Transcription, GeneticAntibodies, ViralBase SequenceBlotting, SouthernCell Line, TumorDNA PrimersDNA, ViralEpithelial CellsGenome, ViralHerpesvirus 4, HumanHumansIn Situ Hybridization, FluorescenceReverse Transcriptase Polymerase Chain ReactionVirus IntegrationAntibodies, ViralDNA PrimersDNA, Viral

Identifiers

PMID21593154
PMCPMC3147926

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.