Evidence map›Paper›PMID 21592966›Full record

ArticleThe Journal of biological chemistry2011

Insights into structure and function of the active site of SoxAX cytochromes.

James R Kilmartin, Megan J Maher, Kuakarun Krusong, Christopher J Noble, Graeme R Hanson, Paul V Bernhardt, Mark J Riley, Ulrike Kappler

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  11. The bacterial SoxAX cytochromes.Cellular and molecular life sciences : CMLS · 2013
    Review
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  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

James R KilmartinCentre for Metals in Biology, School of Chemistry and Molecular Biosciences, University of Queensland, St. Lucia, Queensland 4072, Australia.
Megan J Maher
Kuakarun Krusong
Christopher J Noble
Graeme R Hanson
Paul V Bernhardt
Mark J Riley
Ulrike Kappler
University of Queensland · AUCentenary Institute · AUChulalongkorn University · THInstitute of Metals Research · CN

Funding

Biotechnology and Biological Sciences Research Council BB/C51725
6 · The paper itself

Abstract

SoxAX cytochromes catalyze the formation of heterodisulfide bonds between inorganic sulfur compounds and a carrier protein, SoxYZ. They contain unusual His/Cys-ligated heme groups with complex spectroscopic signatures. The heme-ligating cysteine has been implicated in SoxAX catalysis, but neither the SoxAX spectroscopic properties nor its catalysis are fully understood at present. We have solved the first crystal structure for a group 2 SoxAX protein (SnSoxAX), where an N-terminal extension of SoxX forms a novel structure that supports dimer formation. Crystal structures of SoxAX with a heme ligand substitution (C236M) uncovered an inherent flexibility of this SoxA heme site, with both bonding distances and relative ligand orientation differing between asymmetric units and the new residue, Met(236), representing an unusual rotamer of methionine. The flexibility of the SnSoxAX(C236M) SoxA heme environment is probably the cause of the four distinct, new EPR signals, including a high spin ferric heme form, that were observed for the enzyme. Despite the removal of the catalytically active cysteine heme ligand and drastic changes in the redox potential of the SoxA heme (WT, -479 mV; C236M, +85 mV), the substituted enzyme was catalytically active in glutathione-based assays although with reduced turnover numbers (WT, 3.7 s(-1); C236M, 2.0 s(-1)). SnSoxAX(C236M) was also active in assays using SoxYZ and thiosulfate as the sulfur substrate, suggesting that Cys(236) aids catalysis but is not crucial for it. The SoxYZ-based SoxAX assay is the first assay for an isolated component of the Sox multienzyme system.

Indexed as

Amino Acid SubstitutionBacterial ProteinsCatalysisCatalytic DomainCrystallography, X-RayCytochrome c GroupEscherichia coliGram-Negative Aerobic Rods and CocciHemeMutation, MissenseOxidoreductasesProtein MultimerizationProtein Structure, QuaternaryRhodobacter capsulatusStructure-Activity RelationshipBacterial ProteinsCytochrome c Groupdiheme cytochrome cHemeOxidoreductases

Identifiers

PMID21592966
PMCPMC3137062
OpenAlexW2031304467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.