Evidence map›Paper›PMID 21576453›Full record

ArticleAntimicrobial agents and chemotherapy2011

Piperaquine resistance is associated with a copy number variation on chromosome 5 in drug-pressured Plasmodium falciparum parasites.

Richard T Eastman, Neekesh V Dharia, Elizabeth A Winzeler, David A Fidock

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed, 1 pooled it
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 1 synthesis or guideline pooled it, 107 citations in OpenAlex.

  1. Pooled it
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  12. Review
  13. Plasmodium falciparum resistance to ACTs: Emergence, mechanisms, and outlook.International journal for parasitology. Drugs and drug resistance · 2021
    Article
  14. Review
  15. Article
  16. PfMFR3: A Multidrug-Resistant Modulator inACS infectious diseases · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Unsymmetrical Bisquinolines with High Potency againstMolecules (Basel, Switzerland) · 2020
    Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Richard T EastmanDepartment of Microbiology and Immunology, Columbia University Medical Center, New York, NY 10032, USA. richard.eastman@nih.gov
Neekesh V Dharia
Elizabeth A Winzeler
David A Fidock
Columbia University Irving Medical Center · USGenomics Institute of the Novartis Research Foundation · USScripps Research Institute · US

Funding

Discovery of chemically validated malaria liver stage targetsR01AI090141 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2011 to 2019
$3.4M
Experimental Annotation of the P. Falciparum GenomeR01AI059472 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WINZELER, ELIZABETH A · 2005 to 2009
$2.2M
Training in Interdisciplinary Research to Reduce Antimicrobial Resistance (TIRAR)T90NR010824 · NINR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LARSON, ELAINE LUCILLE · 2007 to 2011
$1.0M
NIAID NIH HHS AI059472NIAID NIH HHS R01 AI059472NIAID NIH HHS R01 AI090141NINR NIH HHS T90 NR010824
6 · The paper itself

Abstract

The combination of piperaquine and dihydroartemisinin has recently become the official first-line therapy in several Southeast Asian countries. The pharmacokinetic mismatching of these drugs, whose plasma half-lives are ~20 days and ~1 h, respectively, implies that recrudescent or new infections emerging shortly after treatment cessation will encounter piperaquine as a monotherapy agent. This creates substantial selection pressure for the emergence of resistance. To elucidate potential resistance determinants, we subjected cloned Plasmodium falciparum Dd2 parasites to continuous piperaquine pressure in vitro (47 nM; ~2-fold higher than the Dd2 50% inhibitory concentration [IC(50)]). The phenotype of outgrowth parasites was assayed in two clones, revealing an IC(50) against piperaquine of 2.1 μM and 1.7 μM, over 100-fold greater than that of the parent. To identify the genetic determinant of resistance, we employed comparative whole-genome hybridization analysis. Compared to the Dd2 parent, this analysis found (in both resistant clones) a novel single-nucleotide polymorphism in P. falciparum crt (pfcrt), deamplification of an 82-kb region of chromosome 5 (that includes pfmdr1), and amplification of an adjacent 63-kb region of chromosome 5. Continued propagation without piperaquine selection pressure resulted in "revertant" piperaquine-sensitive parasites. These retained the pfcrt polymorphism and further deamplified the chromosome 5 segment that encompasses pfmdr1; however, these two independently generated revertants both lost the neighboring 63-kb amplification. These results suggest that a copy number variation event on chromosome 5 (825600 to 888300) is associated with piperaquine resistance. Transgene expression studies are underway with individual genes in this segment to evaluate their contribution to piperaquine resistance.

Indexed as

AntimalarialsArtemisininsDNA Copy Number VariationsDrug ResistanceDrug Therapy, CombinationGenome, ProtozoanMalaria, FalciparumPhenotypePiperazinesPlasmodium falciparumPolymerase Chain ReactionPolymorphism, Single NucleotideQuinolinesAntimalarialsArtemisininsartenimolpiperaquinePiperazinesQuinolines

Identifiers

PMID21576453
PMCPMC3147642
OpenAlexW2154786133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.