Evidence map›Paper›PMID 21576332›Full record

ArticleInfection and immunity2011

Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii.

Hiroaki Naka, Graciela M Dias, Cristiane C Thompson, Christopher Dubay, Fabiano L Thompson, Jorge H Crosa

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Infection and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
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  7. Microbial genomics · 2023
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  9. Comparative genome analyses of fiveMicrobial genomics · 2022
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  11. Article
  12. Review
  13. Essential Genes ofFrontiers in microbiology · 2021
    Article
  14. Comparative Genomics Analysis ofMicroorganisms · 2020
    Article
  15. Article
  16. Article
  17. Article
  18. The Fish PathogenMicroorganisms · 2019
    Article
  19. Vibrio variations on a type three theme.Current opinion in microbiology · 2019
    Review
  20. The Expression of Virulence Factors inFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Hiroaki NakaDepartment of Molecular Microbiology and Immunology, Oregon Health and Science University, Portland, Oregon 97239, USA.
Graciela M Dias
Cristiane C Thompson
Christopher Dubay
Fabiano L Thompson
Jorge H Crosa
Oregon Health & Science University · USUniversidade Federal do Rio de Janeiro · BRFundação Oswaldo Cruz · BR

Funding

IRON UPTAKE AS A VIRULENCE FACTOR IN PATHOGENIC VIBRIOSR01AI019018 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI CROSA, JORGE H · 1985 to 2011
$3.9M
NIAID NIH HHS R01 AI019018PHS HHS R01-19018
6 · The paper itself

Abstract

We dissected the complete genome sequence of the O1 serotype strain Vibrio anguillarum 775(pJM1) and determined the draft genomic sequences of plasmidless strains of serotype O1 (strain 96F) and O2β (strain RV22) and V. ordalii. All strains harbor two chromosomes, but 775 also harbors the virulence plasmid pJM1, which carries the anguibactin-producing and cognate transport genes, one of the main virulence factors of V. anguillarum. Genomic analysis identified eight genomic islands in chromosome 1 of V. anguillarum 775(pJM1) and two in chromosome 2. Some of them carried potential virulence genes for the biosynthesis of O antigens, hemolysins, and exonucleases as well as others for sugar transport and metabolism. The majority of genes for essential cell functions and pathogenicity are located on chromosome 1. In contrast, chromosome 2 contains a larger fraction (59%) of hypothetical genes than does chromosome 1 (42%). Chromosome 2 also harbors a superintegron, as well as host "addiction" genes that are typically found on plasmids. Unique distinctive properties include homologues of type III secretion system genes in 96F, homologues of V. cholerae zot and ace toxin genes in RV22, and the biofilm formation syp genes in V. ordalii. Mobile genetic elements, some of them possibly originated in the pJM1 plasmid, were very abundant in 775, resulting in the silencing of specific genes, with only few insertions in the 96F and RV22 chromosomes.

Indexed as

Genome, BacterialPlasmidsAnimalsBacterial ProteinsBase SequenceCholera ToxinChromosome MappingChromosomes, BacterialDNA, BacterialEndotoxinsExonucleasesFishesGenomic IslandsHemolysin ProteinsMolecular Sequence DataO AntigensAce toxinanguibactinBacterial ProteinsCholera ToxinDNA, BacterialEndotoxinsExonucleasesHemolysin ProteinsO AntigensPeptidesVirulence Factorszonula occludens toxin, Vibrio cholerae

Identifiers

PMID21576332
PMCPMC3191993
OpenAlexW2149931989

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.