Evidence map›Paper›PMID 21576265›Full record

ArticleGenes & development2011

The Dbp5 cycle at the nuclear pore complex during mRNA export I: dbp5 mutants with defects in RNA binding and ATP hydrolysis define key steps for Nup159 and Gle1.

Christine A Hodge, Elizabeth J Tran, Kristen N Noble, Abel R Alcazar-Roman, Rakefet Ben-Yishay, John J Scarcelli, Andrew W Folkmann, Yaron Shav-Tal, Susan R Wente, Charles N Cole

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 112 citations in OpenAlex.

  1. Nuclear speckles are regulatory hubs for viral and host mRNA expression during HSV-1 infection.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Viral interference of nucleocytoplasmic transport.The Journal of biological chemistry · 2025
    Review
  4. Review
  5. Structures and mRNP remodeling mechanism of the TREX-2 complex.Structure (London, England : 1993) · 2025
    Article
  6. Molecular Structure of the mRNA Export Factor Gle1 fromInternational journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Gle1 is required for tRNA to stimulate Dbp5 ATPase activitybioRxiv : the preprint server for biology · 2023
    Article
  10. Review
  11. Article
  12. Imaging Organization of RNA Processing within the Nucleus.Cold Spring Harbor perspectives in biology · 2021
    Review
  13. The Great Escape: mRNA Export through the Nuclear Pore Complex.International journal of molecular sciences · 2021
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Christine A HodgeDepartment of Biochemistry, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.
Elizabeth J Tran
Kristen N Noble
Abel R Alcazar-Roman
Rakefet Ben-Yishay
John J Scarcelli
Andrew W Folkmann
Yaron Shav-Tal
Susan R Wente
Charles N Cole
Vanderbilt University · USDartmouth College · USBar-Ilan University · ILMeharry Medical College · US

Funding

Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
REGULATION OF THE METABOLISM OF EUCARYOTIC MRNAR01GM033998 · NIGMS · DARTMOUTH COLLEGE · PI COLE, CHARLES N. · 1985 to 2013
$6.1M
Molecular Analysis of Nuclear Pore Complex FunctionR37GM051219 · NIGMS · VANDERBILT UNIVERSITY · PI WENTE, SUSAN R. · 2010 to 2019
$5.6M
AUTOIMMUNITY &CONNECTIVE TISSUE BIOLOGY TRAININGT32AR007576 · NIAMS · DARTMOUTH COLLEGE · PI RIGBY, WILLIAM FREDERICK CARSON · 1994 to 2008
$1.7M
Regulation of mRNA Transport in Human CellsF31HD061181 · NICHD · MEHARRY MEDICAL COLLEGE · PI NOBLE, KRISTEN NICOLE · 2009 to 2011
$109k
Investigation of the Role of Gle1 in mRNA ExportF32GM075459 · NIGMS · VANDERBILT UNIVERSITY · PI TRAN, ELIZABETH J · 2005 to 2007
$93k
Defining the role for Gle1 in the fetal lethal motor neuron disease LCCS1F31NS070431 · NINDS · VANDERBILT UNIVERSITY · PI FOLKMANN, ANDREW WILLIAM · 2011 to 2013
$80k
European Research Council 260441NCI NIH HHS 5T32 CA119925NCI NIH HHS T32 CA119925NIAMS NIH HHS AR07576NIAMS NIH HHS T32 AR007576NICHD NIH HHS 1F31 HD061181NICHD NIH HHS F31 HD061181NIGMS NIH HHS 1F32 GM075459NIGMS NIH HHS F32 GM075459NIGMS NIH HHS GM33998NIGMS NIH HHS R01 GM033998NIGMS NIH HHS R37 GM051219NIGMS NIH HHS R37 GM51219NINDS NIH HHS 1F31 NS070431NINDS NIH HHS F31 NS070431
6 · The paper itself

Abstract

Nuclear export of messenger RNA (mRNA) occurs by translocation of mRNA/protein complexes (mRNPs) through nuclear pore complexes (NPCs). The DEAD-box protein Dbp5 mediates export by triggering removal of mRNP proteins in a spatially controlled manner. This requires Dbp5 interaction with Nup159 in NPC cytoplasmic filaments and activation of Dbp5's ATPase activity by Gle1 bound to inositol hexakisphosphate (IP(6)). However, the precise sequence of events within this mechanism has not been fully defined. Here we analyze dbp5 mutants that alter ATP binding, ATP hydrolysis, or RNA binding. We found that ATP binding and hydrolysis are required for efficient Dbp5 association with NPCs. Interestingly, mutants defective for RNA binding are dominant-negative (DN) for mRNA export in yeast and human cells. We show that the DN phenotype stems from competition with wild-type Dbp5 for Gle1 at NPCs. The Dbp5-Gle1 interaction is limiting for export and, importantly, can be independent of Nup159. Fluorescence recovery after photobleaching experiments in yeast show a very dynamic association between Dbp5 and NPCs, averaging <1 sec, similar to reported NPC translocation rates for mRNPs. This work reveals critical steps in the Gle1-IP(6)/Dbp5/Nup159 cycle, and suggests that the number of remodeling events mediated by a single Dbp5 is limited.

Indexed as

Active Transport, Cell NucleusAdenosine TriphosphateCell Line, TumorCell NucleusDEAD-box RNA HelicasesHeLa CellsHumansHydrolysisMutationNuclear PoreNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsPhenotypeProtein BindingRNA, MessengerSaccharomyces cerevisiaeAdenosine TriphosphateDBP5 protein, S cerevisiaeDDX19B protein, humanDEAD-box RNA HelicasesGLE1 protein, S cerevisiaeNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsNUP159 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID21576265
PMCPMC3093121
OpenAlexW2114921531

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.