Evidence map›Paper›PMID 21574170›Full record

ArticleHepatology (Baltimore, Md.)2011

Genomewide microRNA down-regulation as a negative feedback mechanism in the early phases of liver regeneration.

Jingmin Shu, Betsy T Kren, Zhilian Xia, Phillip Y-P Wong, Lihua Li, Eric A Hanse, Michael X Min, Bingshan Li, Jeffrey H Albrecht, Yan Zeng and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 79 citations in OpenAlex.

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  19. MicroRNA biogenesis and cellular proliferation.Translational research : the journal of laboratory and clinical medicine · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Jingmin ShuDepartment of Medicine, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Betsy T Kren
Zhilian Xia
Phillip Y-P Wong
Lihua Li
Eric A Hanse
Michael X Min
Bingshan Li
Jeffrey H Albrecht
Yan Zeng
Subbaya Subramanian
Clifford J Steer
University of Minnesota Medical Center · USMedical Research Foundation · GBOrthopaedic Research Foundation · USUniversity of Michigan–Ann Arbor · US

Funding

The Cyclin D1/CDK4 Complex in Hepatocyte ProliferationR01DK054921 · NIDDK · UNIVERSITY OF MINNESOTA · PI ALBRECHT, JEFFREY H · 1998 to 2017
$4.5M
In Utero Correction of the OTC Defect in LiverR01DK067436 · NIDDK · UNIVERSITY OF MINNESOTA · PI KREN, BETSY T · 2007 to 2011
$1.4M
microRNA Uncoupling of Protein and Transcript Expression in Liver RegenerationR01DK081865 · NIDDK · UNIVERSITY OF MINNESOTA · PI STEER, CLIFFORD JOHN · 2009 to 2010
$965k
NIDDK NIH HHS R01 DK054921NIDDK NIH HHS R01 DK067436NIDDK NIH HHS R01 DK081865
6 · The paper itself

Abstract

unlabelledThe liver is one of the few organs that have the capacity to regenerate in response to injury. We carried out genomewide microRNA (miRNA) microarray studies during liver regeneration in rats after 70% partial hepatectomy (PH) at early and mid time points to more thoroughly understand their role. At 3, 12, and 18 hours post-PH ∼40% of the miRNAs tested were up-regulated. Conversely, at 24 hours post-PH, ∼70% of miRNAs were down-regulated. Furthermore, we established that the genomewide down-regulation of miRNA expression at 24 hours was also correlated with decreased expression of genes, such as Rnasen, Dgcr8, Dicer, Tarbp2, and Prkra, associated with miRNA biogenesis. To determine whether a potential negative feedback loop between miRNAs and their regulatory genes exists, 11 candidate miRNAs predicted to target the above-mentioned genes were examined and found to be up-regulated at 3 hours post-PH. Using reporter and functional assays, we determined that expression of these miRNA-processing genes could be regulated by a subset of miRNAs and that some miRNAs could target multiple miRNA biogenesis genes simultaneously. We also demonstrated that overexpression of these miRNAs inhibited cell proliferation and modulated cell cycle in both Huh-7 human hepatoma cells and primary rat hepatocytes. From these observations, we postulated that selective up-regulation of miRNAs in the early phase after PH was involved in the priming and commitment to liver regeneration, whereas the subsequent genomewide down-regulation of miRNAs was required for efficient recovery of liver cell mass.

conclusionOur data suggest that miRNA changes are regulated by negative feedback loops between miRNAs and their regulatory genes that may play an important role in the steady-state regulation of liver regeneration.

Indexed as

Down-RegulationFeedback, PhysiologicalGenome-Wide Association StudyAnimalsCells, CulturedHumansLiver RegenerationMaleMicroRNAsRatsRats, Sprague-DawleyMicroRNAs

Identifiers

PMID21574170
PMCPMC3145019
OpenAlexW2021256244

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.