Evidence map›Paper›PMID 21573213›Full record

ArticlePloS one2011

sodC-based real-time PCR for detection of Neisseria meningitidis.

Jennifer Dolan Thomas, Cynthia P Hatcher, Dara A Satterfield, M Jordan Theodore, Michelle C Bach, Kristin B Linscott, Xin Zhao, Xin Wang, Raydel Mair, Susanna Schmink and 16 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 1 synthesis or guideline pooled it, 105 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. A novel real-time PCR assay for the simultaneous detection of the four main causes of bacterial meningitis.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2026
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  6. Utility of superoxide dismutase C (Microbiology spectrum · 2025
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  8. Frontiers in microbiology · 2025
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  9. Article
  10. Tracing the Negative Results of Multiplex Real-Time PCR Assay for Diagnosis of Bacterial Pediatrics Meningitis.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2023
    Article
  11. Article
  12. Article
  13. Limitation ofJournal of clinical microbiology · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Human Immunodeficiency Virus Infection Is Associated With Increased Meningococcal Carriage Acquisition Among First-year Students in 2 South African Universities.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  19. Article
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 8 institutions in 4 countries.

Jennifer Dolan ThomasMeningitis and Vaccine Preventable Diseases Branch, Division of Bacterial Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America.
Cynthia P Hatcher
Dara A Satterfield
M Jordan Theodore
Michelle C Bach
Kristin B Linscott
Xin Zhao
Xin Wang
Raydel Mair
Susanna Schmink
Kathryn E Arnold
David S Stephens
Lee H Harrison
Rosemary A Hollick
Ana Lucia Andrade
Juliana Lamaro-Cardoso
Ana Paula S de Lemos
Jenna Gritzfeld
Stephen Gordon
Ahmet Soysal
Mustafa Bakir
Dolly Sharma
Shabnam Jain
Sarah W Satola
Nancy E Messonnier
Leonard W Mayer
Centers for Disease Control and Prevention · USEmory University · USJohns Hopkins University · USLiverpool School of Tropical Medicine · GBMarmara University · TRUniversidade Federal de Goiás · BRGeorgia Department of Community Health · USInstituto Adolfo Lutz · BR

Funding

Real-Time PCR for Diagnosis of Culture-Negative Bacterial Meningitis in S?o PauloD43TW006592 · FIC · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HARRISON, LEE H · 2004 to 2013
$1.7M
FIC NIH HHS 5D43TW006592FIC NIH HHS D43 TW006592
6 · The paper itself

Abstract

Real-time PCR (rt-PCR) is a widely used molecular method for detection of Neisseria meningitidis (Nm). Several rt-PCR assays for Nm target the capsule transport gene, ctrA. However, over 16% of meningococcal carriage isolates lack ctrA, rendering this target gene ineffective at identification of this sub-population of meningococcal isolates. The Cu-Zn superoxide dismutase gene, sodC, is found in Nm but not in other Neisseria species. To better identify Nm, regardless of capsule genotype or expression status, a sodC-based TaqMan rt-PCR assay was developed and validated. Standard curves revealed an average lower limit of detection of 73 genomes per reaction at cycle threshold (C(t)) value of 35, with 100% average reaction efficiency and an average R(2) of 0.9925. 99.7% (624/626) of Nm isolates tested were sodC-positive, with a range of average C(t) values from 13.0 to 29.5. The mean sodC C(t) value of these Nm isolates was 17.6±2.2 (±SD). Of the 626 Nm tested, 178 were nongroupable (NG) ctrA-negative Nm isolates, and 98.9% (176/178) of these were detected by sodC rt-PCR. The assay was 100% specific, with all 244 non-Nm isolates testing negative. Of 157 clinical specimens tested, sodC detected 25/157 Nm or 4 additional specimens compared to ctrA and 24 more than culture. Among 582 carriage specimens, sodC detected Nm in 1 more than ctrA and in 4 more than culture. This sodC rt-PCR assay is a highly sensitive and specific method for detection of Nm, especially in carriage studies where many meningococcal isolates lack capsule genes.

Indexed as

Bacterial ProteinsMolecular Sequence DataNeisseria meningitidisReverse Transcriptase Polymerase Chain ReactionSuperoxide DismutaseBacterial ProteinsSuperoxide Dismutase

Identifiers

PMID21573213
PMCPMC3088665
OpenAlexW2122916182

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.